Transcriptional regulation of memory B cell differentiation

Model for signalling pathways and transcription factors that regulate B cell commitment to the germinal centre (GC) fate. Boxes that indicate signalling molecules are coloured yellow, transcription regulators red, downstream gene targets turquoise and epigenetic modifiers purple. The B cell receptor (BCR), via its signalling subunits Igα and Igβ as well as downstream tyrosine kinases such as SYK and LYN, activates the mitogen-activated protein kinase (MAPK) and phosphoinositide 3-kinase (PI3K)/AKT pathways. MAPK signalling induces the expression of the transcriptional activator myocyte enhancer binding factor 2c (MEF2C), which promotes the transcription of B cell lymphoma-extra large (Bcl2l1) and cyclin D2 (Ccnd2). The expression of the transcriptional repressor inhibitor of DNA binding 3 (ID3) is reduced following B cell activation, allowing for transcription factor 3/4 (TCF3/4)-driven induction of Icosl and Mef2b transcription. PI3K/AKT and nuclear factor-κB (NF-κB) signalling also induce the expression of the transcription factor interferon regulatory factor 4 (IRF4). IRF4 and TCF3/4 induce the expression of the co-activator OBF1 (also known as POU class 2 homeobox associating factor 1 (POU2AF1)), which cooperates with OCT2 (also known as POU class 2 homeobox 2 (POU2F2)) to promote transcription of Slamf1, Syk and Il6. OBF1 and OCT2 can also induce the expression of the transcription factor SPI-B, which acts in a redundant fashion with PU.1 to enhance the transcription of genes encoding B cell surface receptors, such as Cd40, B cell activating factor receptor (Baffr), Toll-like receptor 4 (Tlr4) and Tlr9, and many components of the BCR signalling pathway, including Blnk and Btk. Although transiently elevated levels of IRF4 can induce the expression of B cell lymphoma 6 (BCL-6), sustained IRF4 levels will repress BCL-6 expression. BCL-6 expression is also induced by the transcription factors MEF2B and IRF8/PU.1 as well as the cytokines IL-4 and IL-21, which bind to their respective receptors (IL-4R and IL-21R) and induce signal transducer and activator of transcription 6 (STAT6)/STAT3 signalling. CD40 and/or TLR-driven NF-κB signalling, alongside PI3K/AKT signalling, will induce the expression of the transcription factor MYC, which promotes cellular proliferation by inducing the transcription of Ccnd2/Ccnd3 and the expression of the transcription factor E2F transcription factor 1 (E2F1). E2F1 induces expression of Ezh2 that encodes a Polycomb repressive complex 2 (PRC2) enzymatic component. Enhancer of zeste homologue 2 (EZH2) promotes cell cycle progression by repressing the expression of Cdkn1a, Cdkn2a and Cdkn1b, which encode cyclin-dependent kinase inhibitors. EZH2 also promotes E2F1 release from the retinoblastoma (Rb) protein via phosphorylation of Rb, thereby enhancing E2F1 activation and further EZH2 expression. BCL-6 can directly repress MYC expression, thereby limiting the number of cell divisions that GC B cells undergo. BCL-6 promotes GC B cell development through regulation of numerous genes controlling cellular processes including the DNA damage response, B cell migration, apoptosis, BCR and CD40 signalling, plasma cell differentiation and T cell:B cell interactions. Together, these transcriptional regulators allow for the precise control of GC initiation that is necessary to balance the competing needs of the immune system to induce a protective response while limiting immunopathology.
Transcriptional regulation of memory B cell differentiation

Publication

Transcriptional regulation of memory B cell differentiation. (2020) Brian J. Laidlaw, et al. Nat Rev Immunol. 2020 Oct 6 :1-12. Figure: F1.

Gene mentions


Organism Group Word Match Source NCBI Symbol NCBI ID
Homo sapiens Primates IL-4R/ IL4R ncbigene_symbol IL4R 3566
Homo sapiens Primates Iga IGA ncbigene_synonym CD79A 973
Homo sapiens Primates IL-21R IL21R ncbigene_symbol IL21R 50615
Homo sapiens Primates CD40- CD40 ncbigene_symbol CD40 958
Homo sapiens Primates BCR- BCR ncbigene_symbol BCR 613
Homo sapiens Primates BCR- BCR ncbigene_synonym RN7SL263P 106480993
Homo sapiens Primates TLR TLR famplex_relations TLR1 7096
Homo sapiens Primates TLR TLR famplex_relations TLR2 7097
Homo sapiens Primates TLR TLR famplex_relations TLR3 7098
Homo sapiens Primates TLR TLR famplex_relations TLR4 7099
Homo sapiens Primates TLR TLR famplex_relations TLR5 7100
Homo sapiens Primates TLR TLR famplex_relations TLR6 10333
Homo sapiens Primates TLR TLR famplex_relations TLR7 51284
Homo sapiens Primates TLR TLR famplex_relations TLR8 51311
Homo sapiens Primates TLR TLR famplex_relations TLR9 54106
Homo sapiens Primates TLR TLR famplex_relations TLR10 81793
Homo sapiens Primates LYN LYN ncbigene_symbol LYN 4067
Homo sapiens Primates SYK SYK ncbigene_symbol SYK 6850
Homo sapiens Primates STAT3 STAT3 ncbigene_symbol STAT3 6774
Homo sapiens Primates STAT6/STAT3 STAT6 ncbigene_symbol STAT6 6778
Homo sapiens Primates NF-KB NF-KB ncbigene_synonym NFKB1 4790
Homo sapiens Primates IRF8 IRF8 ncbigene_symbol IRF8 3394
Homo sapiens Primates AKT AKT ncbigene_synonym AKT1 207
Homo sapiens Primates AKT AKT famplex_relations AKT2 208
Homo sapiens Primates AKT AKT famplex_relations AKT3 10000
Homo sapiens Primates PI3K PI3K ncbigene_synonym PIK3CA 5290
Homo sapiens Primates PI3K PI3K ncbigene_synonym PIK3CB 5291
Homo sapiens Primates PI3K PI3K ncbigene_synonym PIK3CD 5293
Homo sapiens Primates PI3K PI3K ncbigene_synonym PIK3CG 5294
Homo sapiens Primates PI3K PI3K famplex_relations PIK3R3 8503
Homo sapiens Primates PI3K PI3K famplex_relations PIK3R4 30849
Homo sapiens Primates PI3K PI3K famplex_relations PIK3R5 23533
Homo sapiens Primates PI3K PI3K famplex_relations PIK3R6 146850
Homo sapiens Primates PI3K PI3K famplex_relations PIK3R1 5295
Homo sapiens Primates PI3K PI3K famplex_relations PIK3R2 5296
Homo sapiens Primates MEF2B MEF2B ncbigene_symbol MEF2B 100271849
Homo sapiens Primates MEF2B MEF2B ncbigene_synonym BORCS8-MEF2B 4207
Homo sapiens Primates MEF2C MEF2C ncbigene_symbol MEF2C 4208
Homo sapiens Primates ID3 ID3 ncbigene_symbol ID3 3399
Homo sapiens Primates IRF4 IRF4 ncbigene_symbol IRF4 3662
Homo sapiens Primates BCL-6 BCL6 ncbigene_symbol BCL6 604
Homo sapiens Primates MYC MYC ncbigene_symbol MYC 4609
Homo sapiens Primates E2F1 E2F1 ncbigene_symbol E2F1 1869
Homo sapiens Primates E2F1 E2F1 ncbigene_synonym UBE2L3 7332
Homo sapiens Primates Ccnd2 CCND2 ncbigene_symbol CCND2 894
Homo sapiens Primates Ccnd3 CCND3 ncbigene_symbol CCND3 896
Homo sapiens Primates TCF3 TCF3 ncbigene_symbol TCF3 6929
Homo sapiens Primates TCF3 TCF3 ncbigene_synonym TCF7L1 83439
Homo sapiens Primates TCF4 TCF4 ncbigene_symbol TCF4 6925
Homo sapiens Primates TCF4 TCF4 ncbigene_synonym TCF7L2 6934
Homo sapiens Primates OBF1 OBF1 ncbigene_synonym POU2AF1 5450
Homo sapiens Primates OCT2 OCT2 ncbigene_synonym POU2F2 5452
Homo sapiens Primates OCT2 OCT2 ncbigene_synonym SLC22A2 6582
Homo sapiens Primates •Icosl ICOSL ncbigene_synonym ICOSLG 23308
Homo sapiens Primates EZH2 EZH2 ncbigene_symbol EZH2 2146
Homo sapiens Primates Slamf1 SLAMF1 ncbigene_symbol SLAMF1 6504
Homo sapiens Primates SPI-B SPI-B ncbigene_synonym SPIB 6689
Homo sapiens Primates Baffr BAFFR ncbigene_synonym TNFRSF13C 115650
Homo sapiens Primates Cdknla CDKN1A ncbigene_symbol CDKN1A 1026
Homo sapiens Primates Cdknla CDKN1A ncbigene_synonym CDPF1 150383
Homo sapiens Primates •Cdkn2a CDKN2A ncbigene_symbol CDKN2A 1029
Homo sapiens Primates Cdkn1b CDKN1B ncbigene_symbol CDKN1B 1027

Chemical mentions

Word Match MeSH Name ChEBI
Cd Cadmium mesh:D002104 cadmium atom chebi:22977

Disease mentions

Word Match MeSH Name DOID