Transcriptional regulation of memory B cell differentiation
Model for signalling pathways and transcription factors that regulate B cell commitment to the germinal centre (GC) fate. Boxes that indicate signalling molecules are coloured yellow, transcription regulators red, downstream gene targets turquoise and epigenetic modifiers purple. The B cell receptor (BCR), via its signalling subunits Igα and Igβ as well as downstream tyrosine kinases such as SYK and LYN, activates the mitogen-activated protein kinase (MAPK) and phosphoinositide 3-kinase (PI3K)/AKT pathways. MAPK signalling induces the expression of the transcriptional activator myocyte enhancer binding factor 2c (MEF2C), which promotes the transcription of B cell lymphoma-extra large (Bcl2l1) and cyclin D2 (Ccnd2). The expression of the transcriptional repressor inhibitor of DNA binding 3 (ID3) is reduced following B cell activation, allowing for transcription factor 3/4 (TCF3/4)-driven induction of Icosl and Mef2b transcription. PI3K/AKT and nuclear factor-κB (NF-κB) signalling also induce the expression of the transcription factor interferon regulatory factor 4 (IRF4). IRF4 and TCF3/4 induce the expression of the co-activator OBF1 (also known as POU class 2 homeobox associating factor 1 (POU2AF1)), which cooperates with OCT2 (also known as POU class 2 homeobox 2 (POU2F2)) to promote transcription of Slamf1, Syk and Il6. OBF1 and OCT2 can also induce the expression of the transcription factor SPI-B, which acts in a redundant fashion with PU.1 to enhance the transcription of genes encoding B cell surface receptors, such as Cd40, B cell activating factor receptor (Baffr), Toll-like receptor 4 (Tlr4) and Tlr9, and many components of the BCR signalling pathway, including Blnk and Btk. Although transiently elevated levels of IRF4 can induce the expression of B cell lymphoma 6 (BCL-6), sustained IRF4 levels will repress BCL-6 expression. BCL-6 expression is also induced by the transcription factors MEF2B and IRF8/PU.1 as well as the cytokines IL-4 and IL-21, which bind to their respective receptors (IL-4R and IL-21R) and induce signal transducer and activator of transcription 6 (STAT6)/STAT3 signalling. CD40 and/or TLR-driven NF-κB signalling, alongside PI3K/AKT signalling, will induce the expression of the transcription factor MYC, which promotes cellular proliferation by inducing the transcription of Ccnd2/Ccnd3 and the expression of the transcription factor E2F transcription factor 1 (E2F1). E2F1 induces expression of Ezh2 that encodes a Polycomb repressive complex 2 (PRC2) enzymatic component. Enhancer of zeste homologue 2 (EZH2) promotes cell cycle progression by repressing the expression of Cdkn1a, Cdkn2a and Cdkn1b, which encode cyclin-dependent kinase inhibitors. EZH2 also promotes E2F1 release from the retinoblastoma (Rb) protein via phosphorylation of Rb, thereby enhancing E2F1 activation and further EZH2 expression. BCL-6 can directly repress MYC expression, thereby limiting the number of cell divisions that GC B cells undergo. BCL-6 promotes GC B cell development through regulation of numerous genes controlling cellular processes including the DNA damage response, B cell migration, apoptosis, BCR and CD40 signalling, plasma cell differentiation and T cell:B cell interactions. Together, these transcriptional regulators allow for the precise control of GC initiation that is necessary to balance the competing needs of the immune system to induce a protective response while limiting immunopathology.

Publication
Transcriptional regulation of memory B cell differentiation. (2020) Brian J. Laidlaw, et al. Nat Rev Immunol. 2020 Oct 6 :1-12. Figure: F1.Organism | Group | Word | Match | Source | NCBI Symbol | NCBI ID |
---|---|---|---|---|---|---|
Homo sapiens | Primates | IL-4R/ | IL4R | ncbigene_symbol | IL4R | 3566 |
Homo sapiens | Primates | Iga | IGA | ncbigene_synonym | CD79A | 973 |
Homo sapiens | Primates | IL-21R | IL21R | ncbigene_symbol | IL21R | 50615 |
Homo sapiens | Primates | CD40- | CD40 | ncbigene_symbol | CD40 | 958 |
Homo sapiens | Primates | BCR- | BCR | ncbigene_symbol | BCR | 613 |
Homo sapiens | Primates | BCR- | BCR | ncbigene_synonym | RN7SL263P | 106480993 |
Homo sapiens | Primates | TLR | TLR | famplex_relations | TLR1 | 7096 |
Homo sapiens | Primates | TLR | TLR | famplex_relations | TLR2 | 7097 |
Homo sapiens | Primates | TLR | TLR | famplex_relations | TLR3 | 7098 |
Homo sapiens | Primates | TLR | TLR | famplex_relations | TLR4 | 7099 |
Homo sapiens | Primates | TLR | TLR | famplex_relations | TLR5 | 7100 |
Homo sapiens | Primates | TLR | TLR | famplex_relations | TLR6 | 10333 |
Homo sapiens | Primates | TLR | TLR | famplex_relations | TLR7 | 51284 |
Homo sapiens | Primates | TLR | TLR | famplex_relations | TLR8 | 51311 |
Homo sapiens | Primates | TLR | TLR | famplex_relations | TLR9 | 54106 |
Homo sapiens | Primates | TLR | TLR | famplex_relations | TLR10 | 81793 |
Homo sapiens | Primates | LYN | LYN | ncbigene_symbol | LYN | 4067 |
Homo sapiens | Primates | SYK | SYK | ncbigene_symbol | SYK | 6850 |
Homo sapiens | Primates | STAT3 | STAT3 | ncbigene_symbol | STAT3 | 6774 |
Homo sapiens | Primates | STAT6/STAT3 | STAT6 | ncbigene_symbol | STAT6 | 6778 |
Homo sapiens | Primates | NF-KB | NF-KB | ncbigene_synonym | NFKB1 | 4790 |
Homo sapiens | Primates | IRF8 | IRF8 | ncbigene_symbol | IRF8 | 3394 |
Homo sapiens | Primates | AKT | AKT | ncbigene_synonym | AKT1 | 207 |
Homo sapiens | Primates | AKT | AKT | famplex_relations | AKT2 | 208 |
Homo sapiens | Primates | AKT | AKT | famplex_relations | AKT3 | 10000 |
Homo sapiens | Primates | PI3K | PI3K | ncbigene_synonym | PIK3CA | 5290 |
Homo sapiens | Primates | PI3K | PI3K | ncbigene_synonym | PIK3CB | 5291 |
Homo sapiens | Primates | PI3K | PI3K | ncbigene_synonym | PIK3CD | 5293 |
Homo sapiens | Primates | PI3K | PI3K | ncbigene_synonym | PIK3CG | 5294 |
Homo sapiens | Primates | PI3K | PI3K | famplex_relations | PIK3R3 | 8503 |
Homo sapiens | Primates | PI3K | PI3K | famplex_relations | PIK3R4 | 30849 |
Homo sapiens | Primates | PI3K | PI3K | famplex_relations | PIK3R5 | 23533 |
Homo sapiens | Primates | PI3K | PI3K | famplex_relations | PIK3R6 | 146850 |
Homo sapiens | Primates | PI3K | PI3K | famplex_relations | PIK3R1 | 5295 |
Homo sapiens | Primates | PI3K | PI3K | famplex_relations | PIK3R2 | 5296 |
Homo sapiens | Primates | MEF2B | MEF2B | ncbigene_symbol | MEF2B | 100271849 |
Homo sapiens | Primates | MEF2B | MEF2B | ncbigene_synonym | BORCS8-MEF2B | 4207 |
Homo sapiens | Primates | MEF2C | MEF2C | ncbigene_symbol | MEF2C | 4208 |
Homo sapiens | Primates | ID3 | ID3 | ncbigene_symbol | ID3 | 3399 |
Homo sapiens | Primates | IRF4 | IRF4 | ncbigene_symbol | IRF4 | 3662 |
Homo sapiens | Primates | BCL-6 | BCL6 | ncbigene_symbol | BCL6 | 604 |
Homo sapiens | Primates | MYC | MYC | ncbigene_symbol | MYC | 4609 |
Homo sapiens | Primates | E2F1 | E2F1 | ncbigene_symbol | E2F1 | 1869 |
Homo sapiens | Primates | E2F1 | E2F1 | ncbigene_synonym | UBE2L3 | 7332 |
Homo sapiens | Primates | Ccnd2 | CCND2 | ncbigene_symbol | CCND2 | 894 |
Homo sapiens | Primates | Ccnd3 | CCND3 | ncbigene_symbol | CCND3 | 896 |
Homo sapiens | Primates | TCF3 | TCF3 | ncbigene_symbol | TCF3 | 6929 |
Homo sapiens | Primates | TCF3 | TCF3 | ncbigene_synonym | TCF7L1 | 83439 |
Homo sapiens | Primates | TCF4 | TCF4 | ncbigene_symbol | TCF4 | 6925 |
Homo sapiens | Primates | TCF4 | TCF4 | ncbigene_synonym | TCF7L2 | 6934 |
Homo sapiens | Primates | OBF1 | OBF1 | ncbigene_synonym | POU2AF1 | 5450 |
Homo sapiens | Primates | OCT2 | OCT2 | ncbigene_synonym | POU2F2 | 5452 |
Homo sapiens | Primates | OCT2 | OCT2 | ncbigene_synonym | SLC22A2 | 6582 |
Homo sapiens | Primates | •Icosl | ICOSL | ncbigene_synonym | ICOSLG | 23308 |
Homo sapiens | Primates | EZH2 | EZH2 | ncbigene_symbol | EZH2 | 2146 |
Homo sapiens | Primates | Slamf1 | SLAMF1 | ncbigene_symbol | SLAMF1 | 6504 |
Homo sapiens | Primates | SPI-B | SPI-B | ncbigene_synonym | SPIB | 6689 |
Homo sapiens | Primates | Baffr | BAFFR | ncbigene_synonym | TNFRSF13C | 115650 |
Homo sapiens | Primates | Cdknla | CDKN1A | ncbigene_symbol | CDKN1A | 1026 |
Homo sapiens | Primates | Cdknla | CDKN1A | ncbigene_synonym | CDPF1 | 150383 |
Homo sapiens | Primates | •Cdkn2a | CDKN2A | ncbigene_symbol | CDKN2A | 1029 |
Homo sapiens | Primates | Cdkn1b | CDKN1B | ncbigene_symbol | CDKN1B | 1027 |
Word | Match | MeSH | Name | ChEBI |
---|---|---|---|---|
Cd | Cadmium | mesh:D002104 | cadmium atom | chebi:22977 |
Disease mentions
Word | Match | MeSH | Name | DOID |
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