Schematic overview of the autophagy process and genetic and drug targets to inhibit specific aspects of autophagy

Schematic overview of the autophagy process and genetic and drug targets to inhibit specific aspects of autophagy. Macroautophagy involves four main steps: induction, nucleation, elongation, and fusion/completion. Upon inhibition of mTORC1 by PI3K/AKT, the autophagy process is initiated, for example, when cells undergo starvation. The autophagy process then begins with the formation of a double-membrane structure, the phagophore, which elongates and matures into an autophagosome, sequestering the cytoplasmic cargo. The autophagosome fuses with lysosomes, generating autolysosomes, and the engulfed content is degraded through proteases, and macromolecules are released into the cytosol. Various, indicated ATG proteins and complexes facilitate certain steps in this catabolic pathway. In addition, the conversion of LC3-I to LC3-II, as well as the degradation of p62, together with the enclosed cargo, serve as markers of active autophagy in molecular and immunochemical assays. Chloroquine and other lysosomal compounds, as well as newly developed inhibitors and genetic targets to specifically block the autophagy pathway at certain points, are indicated. ROS = Reactive oxygen species; PI3K = Phosphoinositide3-kinase; AKT = Protein kinase B; mTORC1 = mammalian target of rapamycin complex I; ATG = Autophagy-related gene; ULK = Unc-51-like autophagy activating kinase; FIP200 = FAK family-interacting protein of 200 kDa; PiP3 = Phosphatidylinositol(3,4,5)-trisphosphate; VPS34 = Class III PI3K vacuolar protein sorting 34. Solid black and green arrows indicate activation and direction of autophagy steps; red dotted lines show inhibition; dotted green arrow indicates recycling of LC3-II-PE by ATG4s.
Schematic overview of the autophagy process and genetic and drug targets to inhibit specific aspects of autophagy

Publication

Current Outlook on Autophagy in Human Leukemia: Foe in Cancer Stem Cells and Drug Resistance, Friend in New Therapeutic Interventions. (2019) Katharina Rothe, et al. Int J Mol Sci. 2019 Feb;20(3):461. Figure: F1.

Gene mentions


Organism Group Word Match Source NCBI Symbol NCBI ID
Homo sapiens Primates AKT AKT ncbigene_synonym AKT1 207
Homo sapiens Primates AKT AKT famplex_relations AKT2 208
Homo sapiens Primates AKT AKT famplex_relations AKT3 10000
Homo sapiens Primates PI3K PI3K ncbigene_synonym PIK3CA 5290
Homo sapiens Primates PI3K PI3K ncbigene_synonym PIK3CB 5291
Homo sapiens Primates PI3K PI3K ncbigene_synonym PIK3CD 5293
Homo sapiens Primates PI3K PI3K ncbigene_synonym PIK3CG 5294
Homo sapiens Primates PI3K PI3K famplex_relations PIK3R3 8503
Homo sapiens Primates PI3K PI3K famplex_relations PIK3R4 30849
Homo sapiens Primates PI3K PI3K famplex_relations PIK3R5 23533
Homo sapiens Primates PI3K PI3K famplex_relations PIK3R6 146850
Homo sapiens Primates PI3K PI3K famplex_relations PIK3R1 5295
Homo sapiens Primates PI3K PI3K famplex_relations PIK3R2 5296
Homo sapiens Primates MTORC1 MTORC1 famplex_relations MTOR 2475
Homo sapiens Primates MTORC1 MTORC1 famplex_relations RPTOR 57521
Homo sapiens Primates p62 P62 ncbigene_synonym GTF2H1 2965
Homo sapiens Primates p62 P62 ncbigene_synonym SQSTM1 8878
Homo sapiens Primates p62 P62 ncbigene_synonym KHDRBS1 10657
Homo sapiens Primates p62 P62 ncbigene_synonym NUP62 23636
Homo sapiens Primates p62 P62 ncbigene_synonym DCTN4 51164
Homo sapiens Primates FIP200 FIP200 ncbigene_synonym RB1CC1 9821
Homo sapiens Primates ATG5 ATG5 ncbigene_symbol ATG5 9474
Homo sapiens Primates ATG12 ATG12 ncbigene_symbol ATG12 9140
Homo sapiens Primates ATG10 ATG10 ncbigene_symbol ATG10 83734
Homo sapiens Primates ATG3 ATG3 ncbigene_symbol ATG3 64422
Homo sapiens Primates VPS34 VPS34 ncbigene_synonym PIK3C3 5289
Homo sapiens Primates BECLIN-1 BECLIN1 ncbigene_synonym BECN1 8678
Homo sapiens Primates ATG4 ATG4 famplex_relations ATG4A 115201
Homo sapiens Primates ATG4 ATG4 famplex_relations ATG4B 23192
Homo sapiens Primates ATG4 ATG4 famplex_relations ATG4C 84938
Homo sapiens Primates ATG4 ATG4 famplex_relations ATG4D 84971
Homo sapiens Primates ULK2 ULK2 ncbigene_symbol ULK2 9706
Homo sapiens Primates ATG13 ATG13 ncbigene_symbol ATG13 9776
Homo sapiens Primates ATG7 ATG7 ncbigene_symbol ATG7 10533
Mus musculus Rodents AKT AKT ncbigene_synonym Akt1 11651
Mus musculus Rodents PI3K PI3K ncbigene_synonym Pik3r1 18708
Mus musculus Rodents Low LOW ncbigene_synonym NA 20997
Mus musculus Rodents p62 P62 ncbigene_synonym Gtf2h1 14884
Mus musculus Rodents p62 P62 ncbigene_synonym Nup62 18226
Mus musculus Rodents p62 P62 ncbigene_synonym Sqstm1 18412
Mus musculus Rodents p62 P62 ncbigene_synonym Khdrbs1 20218
Mus musculus Rodents p62 P62 ncbigene_synonym Dctn4 67665
Mus musculus Rodents FIP200 FIP200 ncbigene_synonym Rb1cc1 12421
Mus musculus Rodents ATG5 ATG5 ncbigene_symbol Atg5 11793
Mus musculus Rodents Auto- AUTO ncbigene_synonym Pain1 260396
Mus musculus Rodents ATG12 ATG12 ncbigene_symbol Atg12 67526
Mus musculus Rodents ATG10 ATG10 ncbigene_symbol Atg10 66795
Mus musculus Rodents ATG3 ATG3 ncbigene_symbol Atg3 67841
Mus musculus Rodents VPS34 VPS34 ncbigene_synonym Pik3c3 225326
Mus musculus Rodents ULK2 ULK2 ncbigene_symbol Ulk2 29869
Mus musculus Rodents ATG13 ATG13 ncbigene_symbol Atg13 51897
Mus musculus Rodents ATG7 ATG7 ncbigene_symbol Atg7 74244
Drosophila melanogaster Invertebrates AKT AKT ncbigene_symbol Akt 41957
Drosophila melanogaster Invertebrates PI3K PI3K ncbigene_synonym Pi3K21B 33203
Drosophila melanogaster Invertebrates PI3K PI3K ncbigene_synonym Pi3K59F 37733
Drosophila melanogaster Invertebrates PI3K PI3K ncbigene_synonym Pi3K68D 39329
Drosophila melanogaster Invertebrates PI3K PI3K ncbigene_synonym Pi3K92E 42446
Drosophila melanogaster Invertebrates MTORC1 MTORC1 ncbigene_synonym Crtc 39970
Drosophila melanogaster Invertebrates Low LOW ncbigene_symbol Low 44325
Drosophila melanogaster Invertebrates p62 P62 ncbigene_synonym ref(2)P 35246
Drosophila melanogaster Invertebrates p62 P62 ncbigene_synonym DCTN4-p62 35709
Drosophila melanogaster Invertebrates p62 P62 ncbigene_synonym Tfb1 36598
Drosophila melanogaster Invertebrates p62 P62 ncbigene_synonym Nup62 36830
Drosophila melanogaster Invertebrates p62 P62 ncbigene_synonym Taf6 40134
Drosophila melanogaster Invertebrates p62 P62 ncbigene_synonym how 42596
Drosophila melanogaster Invertebrates FIP200 FIP200 ncbigene_synonym Atg17 40700
Drosophila melanogaster Invertebrates ATG5 ATG5 ncbigene_symbol Atg5 31666
Drosophila melanogaster Invertebrates ATG12 ATG12 ncbigene_symbol Atg12 39383
Drosophila melanogaster Invertebrates ca CA ncbigene_symbol ca 43518
Drosophila melanogaster Invertebrates ATG10 ATG10 ncbigene_symbol Atg10 50253
Drosophila melanogaster Invertebrates ATG3 ATG3 ncbigene_symbol Atg3 40044
Drosophila melanogaster Invertebrates BECLIN-1 BECLIN-1 ncbigene_synonym Atg6 42850
Drosophila melanogaster Invertebrates ATG4 ATG4 ncbigene_synonym Atg4a 33283
Drosophila melanogaster Invertebrates ATG4 ATG4 ncbigene_synonym Atg4b 41868
Drosophila melanogaster Invertebrates and AND ncbigene_synonym CkIIbeta 32132
Drosophila melanogaster Invertebrates and AND ncbigene_synonym Andorra 32798
Drosophila melanogaster Invertebrates and AND ncbigene_synonym Anp 43595
Drosophila melanogaster Invertebrates and AND ncbigene_synonym Acam 44913
Drosophila melanogaster Invertebrates ATG13 ATG13 ncbigene_symbol Atg13 40998
Drosophila melanogaster Invertebrates ATG7 ATG7 ncbigene_symbol Atg7 37141

Chemical mentions

Word Match MeSH Name ChEBI
Rapamycin Sirolimus mesh:D020123 sirolimus chebi:9168
Lys NA mesh:C026591

Disease mentions

Word Match MeSH Name DOID
Hypoxia NA mesh:D000860