Pathways to retinal regeneration

Pathways to retinal regeneration. (A) Zebrafish are able to completely regenerate their retina via Müller glia. In the uninjured retina, Müller glia is kept quiescent by inhibiting the expression of the genes that control regeneration through Notch signaling and repression by the transcription factor Six3b and the microRNA let7, amongst others. During retinal injury, cell death and inflammation lead to the release of cytokines and growth factors (especially TNFα), which activate receptors and kinases in the Müller glia, leading to activation of β-catenin and phosphorylation of the transcription factor Stat3, which in turns leads to the production of the transcription factor ascl1 and lin28 microRNA, and the activation of the genes that control Müller glia division and dedifferentiation. lin28 also inhibits the production of let7, releasing the inhibition of this pathway. Expression of the transcription factor Pax6b (normally inhibited by the microRNA mi203), allows the amplification and production of retinal progenitors which are then able to redifferentiate into any retinal neurons or Müller glial cells. (B) In medaka fish, lack of production of Sox2 after the production of retinal progenitors restricts their fate to photoreceptors and does not allow the production of other cell types, including new Müller glia. (C) In mice and other mammals, retinal injury does not lead to expression of ascl1 and the rest of regeneration-related genes. Instead Müller glia activate the production of intermediate filaments and increase their size (reactive gliosis) and do not lead to the production of new retinal cells or injury repair. (D) Retinal regeneration can be stimulated in mice by artificially overexpressing ascl1 and inhibiting epigenetic changes (histone deacetylation in particular). With this treatment, Müller glial cells are able to divide and produce retinal progenitors, but their fate is restricted to bipolar and amacrine cells.
Pathways to retinal regeneration

Publication

Leveraging Zebrafish to Study Retinal Degenerations. (2018) Juan M. Angueyra, et al. Front Cell Dev Biol. 2018;6:110. Figure: F2.

Gene mentions


Organism Group Word Match Source NCBI Symbol NCBI ID
Bos taurus Mammals B-Catenin CTNNB1 ncbigene_symbol CTNNB1 539003
Bos taurus Mammals ptat PTAT ncbigene_symbol PTAT 100307234
Bos taurus Mammals ptat PTAT ncbigene_symbol PTAT 100307247
Bos taurus Mammals ptat PTAT ncbigene_symbol PTAT 100307254
Bos taurus Mammals ptat PTAT ncbigene_symbol PTAT 100307258
Bos taurus Mammals ptat PTAT ncbigene_symbol PTAT 100307293
Bos taurus Mammals ptat PTAT ncbigene_symbol PTAT 100307558
Bos taurus Mammals ptat PTAT ncbigene_symbol PTAT 100307705
Bos taurus Mammals ptat PTAT ncbigene_symbol PTAT 100308648
Bos taurus Mammals ptat PTAT ncbigene_symbol PTAT 100308657
Bos taurus Mammals ptat PTAT ncbigene_symbol PTAT 100308860
Bos taurus Mammals ptat PTAT ncbigene_symbol PTAT 100308949
Bos taurus Mammals asc ASC ncbigene_synonym PYCARD 282846
Bos taurus Mammals asc ASC ncbigene_synonym STS 509206
Bos taurus Mammals lin28 LIN28 ncbigene_synonym LIN28A 614997
Bos taurus Mammals (TNFa) TNFA ncbigene_synonym TNF 280943
Bos taurus Mammals Six3 SIX3 ncbigene_symbol SIX3 616756
Bos taurus Mammals ascl1 ASCL1 ncbigene_symbol ASCL1 540473
Bos taurus Mammals lat? LAT ncbigene_symbol LAT 514735
Mus musculus Rodents B-Catenin CTNNB1 ncbigene_symbol Ctnnb1 12387
Mus musculus Rodents ascl ASC1 ncbigene_symbol Asc1 104385
Mus musculus Rodents ascl ASC1 ncbigene_synonym Slc7a10 53896
Mus musculus Rodents ascl ASC1 ncbigene_synonym Trip4 56404
Mus musculus Rodents asc ASC ncbigene_synonym Pycard 66824
Mus musculus Rodents lin28 LIN28 ncbigene_synonym Lin28a 83557
Mus musculus Rodents (TNFa) TNFA ncbigene_synonym Tnf 21926
Mus musculus Rodents Six3 SIX3 ncbigene_symbol Six3 20473
Mus musculus Rodents ascl1 ASCL1 ncbigene_symbol Ascl1 17172
Mus musculus Rodents lat? LAT ncbigene_symbol Lat 16797
Mus musculus Rodents In2 IN2 ncbigene_synonym In(17)2t 16259
Homo sapiens Primates glia) GIIA ncbigene_synonym GANAB 23193
Homo sapiens Primates B-Catenin CTNNB1 ncbigene_symbol CTNNB1 1499
Homo sapiens Primates Notch NOTCH famplex_relations NOTCH1 4851
Homo sapiens Primates Notch NOTCH famplex_relations NOTCH2 4853
Homo sapiens Primates Notch NOTCH famplex_relations NOTCH3 4854
Homo sapiens Primates Notch NOTCH famplex_relations NOTCH4 4855
Homo sapiens Primates histone HISTONE famplex_relations H1-0 3005
Homo sapiens Primates histone HISTONE famplex_relations H1-1 3024
Homo sapiens Primates histone HISTONE famplex_relations H1-2 3006
Homo sapiens Primates histone HISTONE famplex_relations H1-3 3007
Homo sapiens Primates histone HISTONE famplex_relations H1-4 3008
Homo sapiens Primates histone HISTONE famplex_relations H1-5 3009
Homo sapiens Primates histone HISTONE famplex_relations H1-6 3010
Homo sapiens Primates histone HISTONE famplex_relations H1-7 341567
Homo sapiens Primates histone HISTONE famplex_relations H1-8 132243
Homo sapiens Primates histone HISTONE famplex_relations H1-10 8971
Homo sapiens Primates histone HISTONE famplex_relations NA NaN
Homo sapiens Primates histone HISTONE famplex_relations H2AB1 474382
Homo sapiens Primates histone HISTONE famplex_relations H2AJ 55766
Homo sapiens Primates histone HISTONE famplex_relations H2AZ2 94239
Homo sapiens Primates histone HISTONE famplex_relations H2AX 3014
Homo sapiens Primates histone HISTONE famplex_relations MACROH2A1 9555
Homo sapiens Primates histone HISTONE famplex_relations MACROH2A2 55506
Homo sapiens Primates histone HISTONE famplex_relations H2AZ1 3015
Homo sapiens Primates histone HISTONE famplex_relations H2AC1 221613
Homo sapiens Primates histone HISTONE famplex_relations H2AC6 8334
Homo sapiens Primates histone HISTONE famplex_relations H2AC7 3013
Homo sapiens Primates histone HISTONE famplex_relations H2AC12 85235
Homo sapiens Primates histone HISTONE famplex_relations H2AC14 8331
Homo sapiens Primates histone HISTONE famplex_relations H2AC21 317772
Homo sapiens Primates histone HISTONE famplex_relations H2AC20 8338
Homo sapiens Primates histone HISTONE famplex_relations H2AC25 92815
Homo sapiens Primates histone HISTONE famplex_relations H2BC1 255626
Homo sapiens Primates histone HISTONE famplex_relations H2BC3 3018
Homo sapiens Primates histone HISTONE famplex_relations H2BC5 3017
Homo sapiens Primates histone HISTONE famplex_relations H2BC9 8345
Homo sapiens Primates histone HISTONE famplex_relations H2BC11 8970
Homo sapiens Primates histone HISTONE famplex_relations H2BC12 85236
Homo sapiens Primates histone HISTONE famplex_relations H2BC13 8340
Homo sapiens Primates histone HISTONE famplex_relations H2BC14 8342
Homo sapiens Primates histone HISTONE famplex_relations H2BC15 8341
Homo sapiens Primates histone HISTONE famplex_relations H2BC17 8348
Homo sapiens Primates histone HISTONE famplex_relations H2BC18 440689
Homo sapiens Primates histone HISTONE famplex_relations H2BC19P 337874
Homo sapiens Primates histone HISTONE famplex_relations H2BC20P 337873
Homo sapiens Primates histone HISTONE famplex_relations H2BC21 8349
Homo sapiens Primates histone HISTONE famplex_relations H2BC26 128312
Homo sapiens Primates histone HISTONE famplex_relations H2BC12L 54145
Homo sapiens Primates histone HISTONE famplex_relations H2BW2 286436
Homo sapiens Primates histone HISTONE famplex_relations H2BW1 158983
Homo sapiens Primates histone HISTONE famplex_relations H3-4 8290
Homo sapiens Primates histone HISTONE famplex_relations H3-5 440093
Homo sapiens Primates histone HISTONE famplex_relations H4C7 8369
Homo sapiens Primates ascl ASC1 ncbigene_synonym RPL3 6122
Homo sapiens Primates ascl ASC1 ncbigene_synonym TRIP4 9325
Homo sapiens Primates ascl ASC1 ncbigene_synonym SLC7A10 56301
Homo sapiens Primates asc ASC ncbigene_synonym STS 412
Homo sapiens Primates asc ASC ncbigene_synonym PYCARD 29108
Homo sapiens Primates lin28 LIN28 ncbigene_synonym LIN28A 79727
Homo sapiens Primates MAPK MAPK famplex_relations MAPK1 5594
Homo sapiens Primates MAPK MAPK famplex_relations MAPK3 5595
Homo sapiens Primates MAPK MAPK famplex_relations MAPK11 5600
Homo sapiens Primates MAPK MAPK famplex_relations MAPK12 6300
Homo sapiens Primates MAPK MAPK famplex_relations MAPK13 5603
Homo sapiens Primates MAPK MAPK famplex_relations MAPK14 1432
Homo sapiens Primates MAPK MAPK famplex_relations MAPK8 5599
Homo sapiens Primates MAPK MAPK famplex_relations MAPK9 5601
Homo sapiens Primates MAPK MAPK famplex_relations MAPK10 5602
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations ANGPT1 284
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations ANGPT2 285
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations ANGPT4 51378
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations AREG 374
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations BDNF 627
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations CSF1 1435
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations EFNA1 1942
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations EFNA2 1943
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations EFNA3 1944
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations EFNA4 1945
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations EFNA5 1946
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations EGF 1950
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations EREG 2069
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations FGF1 2246
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations FGF10 2255
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations FGF16 8823
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations FGF17 8822
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations FGF18 8817
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations FGF19 9965
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations FGF2 2247
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations FGF20 26281
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations FGF21 26291
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations FGF22 27006
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations FGF23 8074
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations FGF3 2248
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations FGF4 2249
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations FGF5 2250
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations FGF6 2251
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations FGF7 2252
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations FGF8 2253
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations FGF9 2254
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations FLT3LG 2323
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations HGF 3082
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations IGF1 3479
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations IGF2 3481
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations INS 3630
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations KITLG 4254
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations NGF 4803
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations NTF3 4908
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations NTF4 4909
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations PDGFA 5154
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations PDGFB 5155
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations PDGFC 56034
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations PDGFD 80310
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations PGF 5228
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations TGFA 7039
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations VEGFA 7422
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations VEGFB 7423
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations VEGFC 7424
Homo sapiens Primates GrowthFactors GROWTHFACTOR famplex_relations VEGFD 2277
Homo sapiens Primates (TNFa) TNFA ncbigene_synonym TNF 7124
Homo sapiens Primates Six3 SIX3 ncbigene_symbol SIX3 6496
Homo sapiens Primates ascl1 ASCL1 ncbigene_symbol ASCL1 429
Homo sapiens Primates Paxób PAXB ncbigene_synonym DMBX1 127343
Homo sapiens Primates Stat STAT ncbigene_synonym SOAT1 6646
Homo sapiens Primates Stat STAT famplex_relations STAT1 6772
Homo sapiens Primates Stat STAT famplex_relations STAT2 6773
Homo sapiens Primates Stat STAT famplex_relations STAT3 6774
Homo sapiens Primates Stat STAT famplex_relations STAT4 6775
Homo sapiens Primates Stat STAT famplex_relations STAT6 6778
Homo sapiens Primates Stat STAT famplex_relations STAT5A 6776
Homo sapiens Primates Stat STAT famplex_relations STAT5B 6777
Homo sapiens Primates lat? LAT ncbigene_symbol LAT 27040
Homo sapiens Primates lat? LAT ncbigene_synonym ORC3 23595
Homo sapiens Primates lat? LAT ncbigene_synonym SPNS1 83985
Homo sapiens Primates MAP MAP ncbigene_synonym SGSM3 27352
Rattus norvegicus Rodents B-Catenin CTNNB1 ncbigene_symbol Ctnnb1 84353
Rattus norvegicus Rodents Notch NOTCH ncbigene_synonym Notch1 25496
Rattus norvegicus Rodents histone HISTONE ncbigene_synonym H2bc1 24829
Rattus norvegicus Rodents ascl ASC1 ncbigene_synonym Slc7a10 114518
Rattus norvegicus Rodents ascl ASC1 ncbigene_synonym Ascc1 294512
Rattus norvegicus Rodents asc ASC ncbigene_synonym Pycard 282817
Rattus norvegicus Rodents lin28 LIN28 ncbigene_synonym Lin28c 298542
Rattus norvegicus Rodents lin28 LIN28 ncbigene_synonym Lin28a 500562
Rattus norvegicus Rodents (TNFa) TNFA ncbigene_synonym Tnf 24835
Rattus norvegicus Rodents Six3 SIX3 ncbigene_symbol Six3 78974
Rattus norvegicus Rodents ascl1 ASCL1 ncbigene_symbol Ascl1 64186
Rattus norvegicus Rodents lat? LAT ncbigene_symbol Lat 81511
Capra hircus Mammals B-Catenin CTNNB1 ncbigene_symbol CTNNB1 102191742
Capra hircus Mammals B-Catenin CTNNB1 ncbigene_synonym CTNND1 102183255
Capra hircus Mammals (TNFa) TNFA ncbigene_synonym TNF 100861232
Capra hircus Mammals Six3 SIX3 ncbigene_symbol SIX3 102179678
Capra hircus Mammals ascl1 ASCL1 ncbigene_symbol ASCL1 102188022
Capra hircus Mammals lat? LAT ncbigene_symbol LAT 102178783
Cavia porcellus Rodents B-Catenin CTNNB1 ncbigene_symbol Ctnnb1 100732604
Cavia porcellus Rodents (TNFa) TNFA ncbigene_synonym Tnf 100135630
Cavia porcellus Rodents Six3 SIX3 ncbigene_symbol Six3 100720443
Cavia porcellus Rodents ascl1 ASCL1 ncbigene_symbol Ascl1 100734843
Oryctolagus cuniculus Mammals B-Catenin CTNNB1 ncbigene_symbol CTNNB1 100125985
Oryctolagus cuniculus Mammals (TNFa) TNFA ncbigene_synonym TNF 100009088
Oryctolagus cuniculus Mammals Six3 SIX3 ncbigene_symbol SIX3 100349820
Oryctolagus cuniculus Mammals ascl1 ASCL1 ncbigene_symbol ASCL1 100342114
Cavia porcellus Rodents lat? LAT ncbigene_symbol Lat 100723774
Oryctolagus cuniculus Mammals lat? LAT ncbigene_symbol LAT 100350076
Danio rerio Vertebrates B-Catenin CTNNB1 ncbigene_symbol ctnnb1 30265
Danio rerio Vertebrates ascl ASC1 ncbigene_synonym pycard 57923
Danio rerio Vertebrates lin28 LIN28 ncbigene_synonym lin28ab 394066
Danio rerio Vertebrates (TNFa) TNFA ncbigene_symbol tnfa 405785
Danio rerio Vertebrates (TNFa) TNFA ncbigene_synonym tnfb 554167
Danio rerio Vertebrates Six3 SIX3 ncbigene_synonym six3a 30635
Danio rerio Vertebrates Six3 SIX3 ncbigene_synonym six3b 30636
Danio rerio Vertebrates Paxób PAXB ncbigene_synonym pax2a 30425
Danio rerio Vertebrates Stat STAT ncbigene_synonym stat1b 368481
Danio rerio Vertebrates Stat STAT ncbigene_synonym stat4 368519
Danio rerio Vertebrates lat? LAT ncbigene_symbol lat 100233211
Xenopus laevis Vertebrates Müler MIER ncbigene_synonym mier1.L 379970
Xenopus laevis Vertebrates Müler MIER ncbigene_synonym mier1.S 108715521
Xenopus laevis Vertebrates B-Catenin B-CATENIN ncbigene_synonym ctnnb1.S 380441
Xenopus laevis Vertebrates B-Catenin B-CATENIN ncbigene_synonym ctnnb1.L 399274
Xenopus laevis Vertebrates Notch NOTCH ncbigene_synonym notch1.S 394367
Xenopus laevis Vertebrates Notch NOTCH ncbigene_synonym notch1.L 108698191
Xenopus laevis Vertebrates asc ASC ncbigene_synonym pycard.L 444817
Xenopus laevis Vertebrates asc ASC ncbigene_synonym sts.S 108709162
Xenopus laevis Vertebrates lin28 LIN28 ncbigene_synonym lin28b.S 373796
Xenopus laevis Vertebrates lin28 LIN28 ncbigene_synonym lin28a.S 387262
Xenopus laevis Vertebrates lin28 LIN28 ncbigene_synonym lin28a.L 108708102
Xenopus laevis Vertebrates lin28 LIN28 ncbigene_synonym lin28b.L 108716855
Xenopus laevis Vertebrates MAPK MAPK ncbigene_synonym mapk1.L 397785
Xenopus laevis Vertebrates MAPK MAPK ncbigene_synonym mapk1.S 398985
Xenopus laevis Vertebrates (TNFa) TNFA ncbigene_synonym tnf.L 100137625
Xenopus laevis Vertebrates (TNFa) TNFA ncbigene_synonym tnf.S 108700235
Xenopus laevis Vertebrates Six3 SIX3 ncbigene_synonym six3.L 373739
Xenopus laevis Vertebrates Six3 SIX3 ncbigene_synonym six3.S 398146
Xenopus laevis Vertebrates Six3b SIX3B ncbigene_synonym six6.S 373784
Xenopus laevis Vertebrates ascl1 ASCL1 ncbigene_synonym ascl1.L 378517

Chemical mentions

Word Match MeSH Name ChEBI

Disease mentions

Word Match MeSH Name DOID
Retinal injury NA mesh:D012173
Maller glia NA
Miller glia Genee-Wiedemann syndrome mesh:C537680 postaxial acrofacial dysostosis doid:0111259
gliosis NA mesh:D005911