Sphingolipid metabolic network

The sphingolipid metabolic network. The core biochemical network of the sphingolipid metabolism and the relation to the phosphatidate (LPA) and redox (Radical) networks. The canonical de novo pathway is initiated by a condensation of serine and palmitate by serine palmitoyltransferase (1). The product 3-keto-sphinganine is further processed to sphinganine by 3-ketodihydrosphingosine reductase (2), which can either by phosphorylated by sphingosine kinase (12) or converted to dihydroceramide by dihydroceramide synthase (3) and finally emerging as ceramide by the action of dihydroceramide desaturase (4). The faith of ceramide is then determined by the balance and interaction of several enzymes including ceramidase (8), sphingosine kinase (12), sphingomyelin synthase (5), sphingomyelinase (9), UDP-galactosyl ceramide glycosyltransferase (7)-galactosidase (11),UDP-glucose ceramide glycosyltransferase (6), and-glucosidase (10). Ceramide may also be phosphorylated to ceramide-1 phosphate by ceramide kinase (14), which may be reverted by a putative ceramide phosphatase (15). Sphingosine-1 phosphate may be dephosphorylated by sphingosine-1 phosphate phosphatase (13) or irreversibly degraded by sphingosine-1-phosphate lyase. Many of these enzymes has two or several isoforms. For a review see e.g., Lahiri and Futerman (). The salvage pathway (Lysosome) refers to the re-generation of sphingosine by acidic sphingomyelinase, galactosidase, and glucosidase that generates ceramides, which is further decomposed to sphingosine by acidic ceramidase. Please refer to Table for abbreviation of the enzymes. For further information of the phosphatidate and redox metabolism related to the sphingolipid metabolism (see e.g., Ghelli et al., ; Won and Singh, ).
Sphingolipid metabolic network

Publication

Network-based analysis of the sphingolipid metabolism in hypertension. (2015) Mogens Fenger, et al. Front Genet. 2015;6:84. Figure: F1.

Gene mentions


Organism Group Word Match Source NCBI Symbol NCBI ID
Homo sapiens Primates GCLM GCLM ncbigene_symbol GCLM 2730
Homo sapiens Primates GCLC GCLC ncbigene_symbol GCLC 2729
Homo sapiens Primates GPX1 GPX1 ncbigene_symbol GPX1 2876
Homo sapiens Primates GSTP1 GSTP1 ncbigene_symbol GSTP1 2950
Homo sapiens Primates OPLAH OPLAH ncbigene_symbol OPLAH 26873
Homo sapiens Primates SOD SOD ncbigene_synonym SOD1 6647
Homo sapiens Primates SOD SOD famplex_relations SOD2 6648
Homo sapiens Primates SOD SOD famplex_relations SOD3 6649
Homo sapiens Primates GBA1 GBA1 ncbigene_symbol GBA1 2629
Homo sapiens Primates NOS NOS ncbigene_synonym NOS1 4842
Homo sapiens Primates NOS NOS ncbigene_synonym NOS2 4843
Homo sapiens Primates NOS NOS famplex_relations NOS3 4846
Homo sapiens Primates SMPD1 SMPD1 ncbigene_symbol SMPD1 6609
Homo sapiens Primates LPA LPA ncbigene_symbol LPA 4018
Homo sapiens Primates LPAR LPAR famplex_relations LPAR1 1902
Homo sapiens Primates LPAR LPAR famplex_relations LPAR2 9170
Homo sapiens Primates LPAR LPAR famplex_relations LPAR3 23566
Homo sapiens Primates PLD PLD ncbigene_synonym GPLD1 2822
Homo sapiens Primates PLD PLD famplex_relations PLD1 5337
Homo sapiens Primates PLD PLD famplex_relations PLD2 5338
Homo sapiens Primates PLD PLD famplex_relations PLD3 23646
Homo sapiens Primates PLD PLD famplex_relations PLD4 122618
Homo sapiens Primates PLD PLD famplex_relations PLD5 200150
Homo sapiens Primates PLD PLD famplex_relations PLD6 201164
Rattus norvegicus Rodents GCLM GCLM ncbigene_symbol Gclm 29739
Rattus norvegicus Rodents GCLC GCLC ncbigene_symbol Gclc 25283
Rattus norvegicus Rodents GPX1 GPX1 ncbigene_symbol Gpx1 24404
Rattus norvegicus Rodents GSTP1 GSTP1 ncbigene_symbol Gstp1 24426
Rattus norvegicus Rodents OPLAH OPLAH ncbigene_symbol Oplah 116684
Rattus norvegicus Rodents GBA1 GBA1 ncbigene_symbol Gba1 684536
Rattus norvegicus Rodents SMPD1 SMPD1 ncbigene_symbol Smpd1 308909
Drosophila melanogaster Invertebrates de DE ncbigene_symbol de 248301
Drosophila melanogaster Invertebrates GCLM GCLM ncbigene_symbol Gclm 248194
Drosophila melanogaster Invertebrates GCLC GCLC ncbigene_symbol Gclc 53581
Drosophila melanogaster Invertebrates SOD SOD ncbigene_synonym so 35662
Drosophila melanogaster Invertebrates SOD SOD ncbigene_synonym Sod2 36878
Drosophila melanogaster Invertebrates SOD SOD ncbigene_synonym Sod1 39251
Drosophila melanogaster Invertebrates GBA1 GBA1 ncbigene_synonym Gba1a 42796
Drosophila melanogaster Invertebrates NOS NOS ncbigene_symbol Nos 34495
Drosophila melanogaster Invertebrates NOS NOS ncbigene_symbol nos 42297
Drosophila melanogaster Invertebrates PLD PLD ncbigene_symbol Pld 35554
Drosophila melanogaster Invertebrates AGPAT AGPAT ncbigene_synonym Agpat1 32230
Drosophila melanogaster Invertebrates AGPAT AGPAT ncbigene_synonym Agpat2 34176
Drosophila melanogaster Invertebrates AGPAT AGPAT ncbigene_synonym Agpat4 39819
Drosophila melanogaster Invertebrates AGPAT AGPAT ncbigene_synonym Agpat3 39820
Danio rerio Vertebrates GCLM GCLM ncbigene_symbol gclm 333974
Danio rerio Vertebrates GCLC GCLC ncbigene_symbol gclc 326857
Danio rerio Vertebrates GPX1 GPX1 ncbigene_synonym gpx1a 352926
Danio rerio Vertebrates GSTP1 GSTP1 ncbigene_synonym gstp1.2 79381
Danio rerio Vertebrates OPLAH OPLAH ncbigene_symbol oplah 100151110
Danio rerio Vertebrates GBA1 GBA1 ncbigene_symbol gba1 559072
Danio rerio Vertebrates NOS NOS ncbigene_synonym nos1 60658
Danio rerio Vertebrates SMPD1 SMPD1 ncbigene_symbol smpd1 556700

Chemical mentions

Word Match MeSH Name ChEBI
Hexadecanal hexadecanal mesh:C001647 hexadecanal chebi:17600
Phosphoethanolamine NA mesh:C005448
3-Keto-sphinganine NA mesh:C005682
Sphinganine NA mesh:C005682
Sphinganine-1-P NA mesh:C005682
Dihydroceramide NA mesh:C109343
Ceramide Ceramides mesh:D002518 ceramide chebi:17761
Ceramide-1-P Ceramides mesh:D002518 ceramide chebi:17761
Galactosylceramides Galactosylceramides mesh:D005699 galactosylceramide chebi:36498
Glucosylceramide D-glucosyl-N-acylsphingosine mesh:D005963 Glucosylceramides chebi:18368
Serine Serine mesh:D012694 L-serine chebi:17115
Sphingomyelin NA mesh:D013109
Sphingosine Sphingosine mesh:D013110 sphingosine chebi:16393
Sphingosine-1-P Sphingosine mesh:D013110 sphingosine chebi:16393

Disease mentions

Word Match MeSH Name DOID