mRNA decay pathways in the cytoplasm

mRNA decay pathways in the cytoplasm. There are two major cytoplasmic pathways to degrade mRNA that both start with the shortening of the poly(A) tail by one of the deadenylase complexes (Ccr4-Not or Pan2/3). The exosome can degrade the deadenylated mRNA in the 3′-to-5′ direction, and the scavenger decapping enzyme, Dcs1, degrades the remaining cap. The most prominent pathway involves decapping by Dcp1 and Dcp2 and subsequent degradation by the 5′-to-3′ exonuclease, Xrn1.
mRNA decay pathways in the cytoplasm

Publication

Coupling mRNA Synthesis and Decay. (2014) Katherine A. Braun, et al. Mol Cell Biol. 2014 Nov;34(22):4078-4087. Figure: F2.

Gene mentions


Organism Group Word Match Source NCBI Symbol NCBI ID
Homo sapiens Primates Pan2 PAN2 ncbigene_symbol PAN2 9924
Homo sapiens Primates Pan2 PAN2 ncbigene_synonym RDH14 57665
Homo sapiens Primates Pan2 PAN2 ncbigene_synonym NLRP4 147945
Homo sapiens Primates Dcp1 DCP1 ncbigene_synonym ACE 1636
Homo sapiens Primates Dcp1 DCP1 ncbigene_synonym DCP1B 196513
Homo sapiens Primates Dcp1/2 DCP2 ncbigene_symbol DCP2 167227
Homo sapiens Primates Xrn1 XRN1 ncbigene_symbol XRN1 54464
Homo sapiens Primates Dcs1 DCS1 ncbigene_synonym DCPS 28960
Drosophila melanogaster Invertebrates Pan2 PAN2 ncbigene_symbol PAN2 35893
Drosophila melanogaster Invertebrates decay DECAY ncbigene_symbol Decay 42008
Drosophila melanogaster Invertebrates Dcp1 DCP1 ncbigene_symbol Dcp-1 37729
Drosophila melanogaster Invertebrates Dcp1 DCP1 ncbigene_symbol DCP1 37790
Drosophila melanogaster Invertebrates Dcp1 DCP1 ncbigene_synonym Cp1 36546
Drosophila melanogaster Invertebrates Dcp1 DCP1 ncbigene_synonym Lcp65Ad 38707
Drosophila melanogaster Invertebrates Dcp1/2 DCP2 ncbigene_symbol DCP2 39722
Drosophila melanogaster Invertebrates Dcp1/2 DCP2 ncbigene_synonym Dredd 31011
Drosophila melanogaster Invertebrates Dcp1/2 DCP2 ncbigene_synonym gem 36064
Drosophila melanogaster Invertebrates Dcp1/2 DCP2 ncbigene_synonym Lcp65Ac 38708
Drosophila melanogaster Invertebrates AA AA ncbigene_symbol aa 44792
Drosophila melanogaster Invertebrates Xrn1 XRN1 ncbigene_synonym pcm 32935

Chemical mentions

Word Match MeSH Name ChEBI

Disease mentions

Word Match MeSH Name DOID