Fission yeast priRNA pathway

Fission yeast priRNA pathway. (A) Bidirectional transcription from pericentromeric repeat sequences produces products that are processed into fragments, possibly through RNA degradation or other unknown mechanism. priRNA (primal RNA) precursor are bound by Ago1 and trimmed on the 3′ end by an exonuclease Triman. The loaded Ago1 with priRNA can find the nascent transcription by RNA Polymerase II in the chromatin, and recruits RNA-dependent polymerase complex (RDRC) containing Rdp1, Hrr1, and Cid12. Dicer cleaves the dsRNA to form siRNA. The siRNA can be loaded to Ago1 that continues the positive feedback cycle. The mature Ago1–siRNA complex recruits factors required for nucleation and spreading of heterochromatin to form pericentromeric heterochromatin. (B) priRNAs from mRNAs. In wild-type yeast, the exosome degrades RNA fragments. However, in mutants of exosome components, the priRNA pathway can operate more actively on mRNAs due to the lack of competition with the exosome.
Fission yeast priRNA pathway

Publication

Argonaute-dependent small RNAs derived from single-stranded, non-structured precursors. (2014) Li-Ling Chak, et al. Front Genet. 2014;5:172. Figure: F3.

Gene mentions


Organism Group Word Match Source NCBI Symbol NCBI ID
Schizosaccharomyces pombe Plants and Fungi Ago1 AGO1 ncbigene_symbol ago1 2539403
Schizosaccharomyces pombe Plants and Fungi Cid12 CID12 ncbigene_symbol cid12 2539423
Schizosaccharomyces pombe Plants and Fungi Rdp1 RDP1 ncbigene_symbol rdp1 2542198
Schizosaccharomyces pombe Plants and Fungi Rdp1 RDP1 ncbigene_synonym deb1 2542539
Schizosaccharomyces pombe Plants and Fungi Tas3 TAS3 ncbigene_symbol tas3 2540735
Schizosaccharomyces pombe Plants and Fungi Hrr1 HRR1 ncbigene_symbol hrr1 2539248
Arabidopsis thaliana Plants and Fungi Ago1 AGO1 ncbigene_symbol AGO1 841262
Arabidopsis thaliana Plants and Fungi Cid12 CID12 ncbigene_symbol CID12 826653
Arabidopsis thaliana Plants and Fungi Tas3 TAS3 ncbigene_symbol TAS3 3768766
Homo sapiens Primates Ago1 AGO1 ncbigene_symbol AGO1 26523
Homo sapiens Primates polymerase POLYMERASE ncbigene_synonym ERVK-9 100616102
Homo sapiens Primates polymerase POLYMERASE ncbigene_synonym ERVK-11 100862688
Homo sapiens Primates polymerase POLYMERASE ncbigene_synonym ERVK-19 105376906
Homo sapiens Primates (RDRC) RDRC ncbigene_synonym SLC1A5 6510
Homo sapiens Primates Hrr1 HRR1 ncbigene_synonym NR1H4 9971
Homo sapiens Primates Dicer DICER ncbigene_synonym DICER1 23405

Chemical mentions

Word Match MeSH Name ChEBI

Disease mentions

Word Match MeSH Name DOID