Selection of three major metabolic pathways induced in Arabidopsis plants by
Selection of three major metabolic pathways induced in Arabidopsis plants by . A, signaling pathway. B, Network involved in the biosynthesis of indole glucosinolates and camalexin. C, Network involved in the biosynthesis of aliphatic glucosinolates. Colored squares (leaves) and triangles (roots) represent statistically significant transcriptional changes induced in Arabidopsis by at 10, 14, or 18 . Red = up-regulated; green = down-regulated; yellow = statistically significant transcriptional changes with fold changes less than 2.0; white = no statistically significant difference. Detailed information for each gene can be found in .
Publication
Metabolic and Transcriptomic Changes Induced in Arabidopsis by the Rhizobacterium Pseudomonas fluorescens SS101. (2012) Judith E. van de Mortel, et al. Plant Physiol. 2012 Dec;160(4):2173-2188. Figure: F4.| Organism | Group | Word | Match | Source | NCBI Symbol | NCBI ID |
|---|---|---|---|---|---|---|
| Arabidopsis thaliana | Plants and Fungi | MYB122 | MYB122 | ncbigene_symbol | MYB122 | 843748 |
| Arabidopsis thaliana | Plants and Fungi | MYB34 | MYB34 | ncbigene_symbol | MYB34 | 836210 |
| Arabidopsis thaliana | Plants and Fungi | MYB28 | MYB28 | ncbigene_symbol | MYB28 | 836263 |
| Arabidopsis thaliana | Plants and Fungi | MYB29 | MYB29 | ncbigene_symbol | MYB29 | 830662 |
| Arabidopsis thaliana | Plants and Fungi | MYB76 | MYB76 | ncbigene_symbol | MYB76 | 830663 |
| Arabidopsis thaliana | Plants and Fungi | SID1 | SID1 | ncbigene_synonym | EDS5 | 830058 |
| Arabidopsis thaliana | Plants and Fungi | SID2 | SID2 | ncbigene_synonym | EDS16 | 843810 |
| Arabidopsis thaliana | Plants and Fungi | PAD4 | PAD4 | ncbigene_symbol | PAD4 | 824408 |
| Arabidopsis thaliana | Plants and Fungi | EDS1 | EDS1 | ncbigene_symbol | EDS1 | 823964 |
| Arabidopsis thaliana | Plants and Fungi | CYP79B3 | CYP79B3 | ncbigene_symbol | CYP79B3 | 816765 |
| Arabidopsis thaliana | Plants and Fungi | BCAT4 | BCAT4 | ncbigene_symbol | BCAT4 | 821508 |
| Arabidopsis thaliana | Plants and Fungi | MAM1 | MAM1 | ncbigene_symbol | MAM1 | 832365 |
| Arabidopsis thaliana | Plants and Fungi | CYP71A12 | CYP71A12 | ncbigene_symbol | CYP71A12 | 817626 |
| Arabidopsis thaliana | Plants and Fungi | CYP71A13 | CYP71A13 | ncbigene_symbol | CYP71A13 | 817628 |
| Arabidopsis thaliana | Plants and Fungi | MAM3 | MAM3 | ncbigene_synonym | IMS2 | 832366 |
| Arabidopsis thaliana | Plants and Fungi | AtLeuD1 | ATLEUD1 | ncbigene_synonym | IPMI2 | 818912 |
| Arabidopsis thaliana | Plants and Fungi | BASS5 | BASS5 | ncbigene_synonym | BAT5 | 826811 |
| Arabidopsis thaliana | Plants and Fungi | :CYP83B1 | CYP83B1 | ncbigene_symbol | CYP83B1 | 829277 |
| Arabidopsis thaliana | Plants and Fungi | UGT74B1 | UGT74B1 | ncbigene_symbol | UGT74B1 | 839022 |
| Arabidopsis thaliana | Plants and Fungi | :AtSOT16 | ATSOT16 | ncbigene_synonym | SOT16 | 843750 |
| Arabidopsis thaliana | Plants and Fungi | CYP71B15 | CYP71B15 | ncbigene_synonym | PAD3 | 822298 |
| Arabidopsis thaliana | Plants and Fungi | CYP79F1 | CYP79F1 | ncbigene_symbol | CYP79F1 | 838211 |
| Arabidopsis thaliana | Plants and Fungi | CYP79F2 | CYP79F2 | ncbigene_symbol | CYP79F2 | 838210 |
| Arabidopsis thaliana | Plants and Fungi | NPR1 | NPR1 | ncbigene_symbol | NPR1 | 842733 |
| Arabidopsis thaliana | Plants and Fungi | CYP83A1 | CYP83A1 | ncbigene_symbol | CYP83A1 | 827011 |
| Arabidopsis thaliana | Plants and Fungi | SUR1 | SUR1 | ncbigene_symbol | SUR1 | 816585 |
| Arabidopsis thaliana | Plants and Fungi | CYP81F1 | CYP81F1 | ncbigene_synonym | CYP91A2 | 829897 |
| Arabidopsis thaliana | Plants and Fungi | CYP81F4 | CYP81F4 | ncbigene_symbol | CYP81F4 | 829895 |
| Arabidopsis thaliana | Plants and Fungi | CYP81F2 | CYP81F2 | ncbigene_symbol | CYP81F2 | 835828 |
| Arabidopsis thaliana | Plants and Fungi | AtSOT17 | ATSOT17 | ncbigene_synonym | SOT17 | 838440 |
| Arabidopsis thaliana | Plants and Fungi | CYP81F3 | CYP81F3 | ncbigene_symbol | CYP81F3 | 829894 |
| Arabidopsis thaliana | Plants and Fungi | AtSOT18 | ATSOT18 | ncbigene_synonym | SOT18 | 843749 |
| Arabidopsis thaliana | Plants and Fungi | PR1 | PR1 | ncbigene_symbol | PR1 | 815949 |
| Arabidopsis thaliana | Plants and Fungi | PR2 | PR2 | ncbigene_synonym | BGL2 | 824893 |
| Arabidopsis thaliana | Plants and Fungi | PR5 | PR5 | ncbigene_symbol | PR5 | 843842 |
| Arabidopsis thaliana | Plants and Fungi | PRS | PRS | ncbigene_symbol | PRS | 817410 |
| Arabidopsis thaliana | Plants and Fungi | IGMT1 | IGMT1 | ncbigene_symbol | IGMT1 | 838706 |
| Arabidopsis thaliana | Plants and Fungi | IGMT2 | IGMT2 | ncbigene_symbol | IGMT2 | 838708 |
| Word | Match | MeSH | Name | ChEBI |
|---|---|---|---|---|
| Indole-3-acetonitrile | NA | mesh:C016516 | ||
| Indole-3-acetaldoxime | indol-3-ylacetaldehyde oxime | mesh:C467098 | indole-3-acetaldoxime | chebi:28311 |
| 1-hydroxy-3-indolyl-methyl glucosinolate | Glucosinolates | mesh:D005961 | glucosinolate | chebi:24279 |
| 1-methoxy-3-indolyl-methyl glucosinolate | Glucosinolates | mesh:D005961 | glucosinolate | chebi:24279 |
| 4-hydroxy-3-indolyl-methyl glucosinolate | Glucosinolates | mesh:D005961 | glucosinolate | chebi:24279 |
| 4-methoxy-3-indolyl-methyl glucosinolate | Glucosinolates | mesh:D005961 | glucosinolate | chebi:24279 |
| Indolyl-methyl glucosinolates | Glucosinolates | mesh:D005961 | glucosinolate | chebi:24279 |
| Methylsulfinylalkyl glucosinolates | Glucosinolates | mesh:D005961 | glucosinolate | chebi:24279 |
| Methylthioalkyl glucosinolates | Glucosinolates | mesh:D005961 | glucosinolate | chebi:24279 |
| Methionine | NA | mesh:D008715 | ||
| Tryptophan | Tryptophan | mesh:D014364 | L-tryptophan | chebi:16828 |
Disease mentions
| Word | Match | MeSH | Name | DOID |
|---|