Cell-signaling pathways from the UPR to autophagy and ER stress-induced apoptosis

Cell-signaling pathways from the UPR to autophagy and ER stress-induced apoptosis. Conditions of ER stress where unfolded or misfolded proteins build up cause GRP78 to release three major ER stress sensors on the ER membrane: PERK, ATF6, and IRE1, which are then activated. Upon release from GRP78, IRE1 oligomerizes, autophosphorylates, and processes XBP1 mRNA to produce an active transcription factor, spliced XBP1 (sXBP1). sXBP1 activates stress-inducible genes involved in protein folding and protein degradation, including the genes ER degradation-enhancing alpha-mannosidase-like protein (EDEM), protein disulphide isomerase (PDI), and X box-binding protein 1 (XBP1). Active ATF6 translocates to the nucleus and induces the expression of genes with ER response elements in their promoters, including CHOP and XBP1. Activated PERK dimerizes and autophosphorylates itself. Activated PERK phosphorylates and inactivates eIF2α, which suppresses global cap-dependent mRNA translation, but activates ATF4 translation. ATF4 translocates to the nucleus and induces the transcription of genes for amino acid metabolism, redox reactions, CHOP, and GADD34. These responses reduce the unfolded protein load in the ER by reducing the global protein synthesis, by increasing the folding capacity of the ER and by removing misfolded proteins from the ER. Largely through the two pathways of the UPR, the PERK-eIF2α and IRE1-TRAF2-JNK pathways, ER stressors can induce autophagy (orange arrow). Activation of the PERK-eIF2α axis of the UPR pathways was shown to upregulate Atg12, convert LC3-I to LC3-II, and subsequently facilitate autophagosome formation. Activated IRE1α can recruit tumor-necrosis factor receptor associated factor 2 (TRAF2) and apoptosis-signal regulating kinase (ASK1), subsequently activating JNK. Severe ER stress leads to activation of JNK that downregulates the anti-apoptotic protein Bcl-2 by phosphorylating Bcl-2 on the mitochondrial and ER membrane. JNK-mediated phosphorylation of Bcl-2 releases Beclin1 from its inhibitory interaction with Bcl-2 at ER membrane. Freed Beclin1 induces autophagy through the formation of hVPS34 complexes. The first step of autophagy (induction) is activated by ULK complex composed of ULK1, Atg13, FIP200, and Atg20. The nucleation step is mediated by a complex involving VPS34 (also known as PI3KCIII) with either Beclin1-Atg14L-VPS34-p150 or Beclin1-UVRAG-VPS34-p150. The elongation of the phagophore is mediated by two ubiquitin-like conjugation systems that together promote the assembly of the Atg5-Atg12-Atg16L complex and the processing of LC3. The lipidated form of LC3-I (LC3-II) is attached to both faces of the phagophore membrane. ER stress can induce apoptosis through an intrinsic pathway involving cytochrome c release from mitochondria and caspase activation. Autophagy is also induced via JNK activation that releases Beclin1 from its inhibitory interaction with Bcl-2 at the level of ER, via Bcl-2 phosphorylation. UVRAG, UV radiation resistance associated gene protein; VPS, vacuolar protein sorting; ERAD, ER-associated degradation. Modified and adapted by permission from Nature Publishing Group from Ref. .
Cell-signaling pathways from the UPR to autophagy and ER stress-induced apoptosis

Publication

Unfolded protein response to autophagy as a promising druggable target for anticancer therapy. (2012) Dong Hoon Suh, et al. Ann N Y Acad Sci. 2012 Oct;1271(1):20-32. Figure: F1.

Gene mentions


Organism Group Word Match Source NCBI Symbol NCBI ID
Mus musculus Rodents JNK JNK ncbigene_synonym Mapk8 26419
Mus musculus Rodents Bax BAX ncbigene_symbol Bax 12028
Mus musculus Rodents Bax BAX ncbigene_synonym Nkx3-1 18095
Mus musculus Rodents TRAF2 TRAF2 ncbigene_symbol Traf2 22030
Mus musculus Rodents Cap-dependent CAP ncbigene_synonym Sorbs1 20411
Mus musculus Rodents Cap-dependent CAP ncbigene_synonym Lnpep 240028
Mus musculus Rodents FIP200 FIP200 ncbigene_synonym Rb1cc1 12421
Mus musculus Rodents P150 P150 ncbigene_synonym Dctn1 13191
Mus musculus Rodents P150 P150 ncbigene_synonym Anpep 16790
Mus musculus Rodents P150 P150 ncbigene_synonym Chaf1a 27221
Mus musculus Rodents P150 P150 ncbigene_synonym Pik3r4 75669
Mus musculus Rodents P150 P150 ncbigene_synonym Akap5 238276
Mus musculus Rodents VPS34 VPS34 ncbigene_synonym Pik3c3 225326
Mus musculus Rodents PS PS ncbigene_symbol Ps 109641
Mus musculus Rodents GRP78,EDEMPDI,PSXBP1, GRP78 ncbigene_synonym Hspa5 14828
Mus musculus Rodents EDEM EDEM ncbigene_synonym Edem1 192193
Mus musculus Rodents XBP1, XBP1 ncbigene_symbol Xbp1 22433
Mus musculus Rodents PDI, PDI ncbigene_synonym Pdia3 14827
Mus musculus Rodents PDI, PDI ncbigene_synonym P4hb 18453
Mus musculus Rodents PDI, PDI ncbigene_synonym Padi2 18600
Mus musculus Rodents GADD34. GADD34 ncbigene_synonym Ppp1r15a 17872
Mus musculus Rodents CHOP,GADD34. CHOP ncbigene_synonym Ddit3 13198
Mus musculus Rodents Ag1 AG1 ncbigene_synonym Dmp1 13406
Mus musculus Rodents Aga AGA ncbigene_symbol Aga 11593
Mus musculus Rodents LCa LCA ncbigene_synonym Clta 12757
Mus musculus Rodents LCa LCA ncbigene_synonym Ptprc 19264
Homo sapiens Primates JNK JNK ncbigene_synonym MAPK8 5599
Homo sapiens Primates JNK JNK famplex_relations MAPK9 5601
Homo sapiens Primates JNK JNK famplex_relations MAPK10 5602
Homo sapiens Primates Bax BAX ncbigene_symbol BAX 581
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMA1 5682
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMA2 5683
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMA3 5684
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMA4 5685
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMA5 5686
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMA6 5687
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMA7 5688
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMA8 143471
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMB1 5689
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMB10 5699
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMB2 5690
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMB3 5691
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMB4 5692
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMB5 5693
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMB6 5694
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMB7 5695
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMB8 5696
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMB9 5698
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMC1 5700
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMC2 5701
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMC3 5702
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMC4 5704
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMC5 5705
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMC6 5706
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMD1 5707
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMD10 5716
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMD11 5717
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMD12 5718
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMD13 5719
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMD14 10213
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMD2 5708
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMD3 5709
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMD4 5710
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMD5 5711
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMD6 9861
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMD7 5713
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMD8 5714
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMD9 5715
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSME1 5720
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSME2 5721
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSME3 10197
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMF1 9491
Homo sapiens Primates Proteasome PROTEASOME famplex_relations SEM1 7979
Homo sapiens Primates Proteasome PROTEASOME famplex_relations USP5 8078
Homo sapiens Primates TRAF2 TRAF2 ncbigene_symbol TRAF2 7186
Homo sapiens Primates TRAF2 TRAF2 ncbigene_synonym TANK 10010
Homo sapiens Primates Cap-dependent CAP ncbigene_synonym CTAA1 1483
Homo sapiens Primates Cap-dependent CAP ncbigene_synonym LNPEP 4012
Homo sapiens Primates Cap-dependent CAP ncbigene_synonym SERPINB6 5269
Homo sapiens Primates Cap-dependent CAP ncbigene_synonym HACD1 9200
Homo sapiens Primates Cap-dependent CAP ncbigene_synonym CAP1 10487
Homo sapiens Primates Cap-dependent CAP ncbigene_synonym SORBS1 10580
Homo sapiens Primates Cap-dependent CAP ncbigene_synonym BRD4 23476
Homo sapiens Primates Cap-dependent CAP famplex_relations CAP2 10486
Homo sapiens Primates FIP200 FIP200 ncbigene_synonym RB1CC1 9821
Homo sapiens Primates P150 P150 ncbigene_synonym ABL1 25
Homo sapiens Primates P150 P150 ncbigene_synonym ANPEP 290
Homo sapiens Primates P150 P150 ncbigene_synonym CTR9 9646
Homo sapiens Primates P150 P150 ncbigene_synonym CHAF1A 10036
Homo sapiens Primates P150 P150 ncbigene_synonym RAB3GAP2 25782
Homo sapiens Primates P150 P150 ncbigene_synonym PIK3R4 30849
Homo sapiens Primates VPS4 VPS4 ncbigene_synonym VPS4A 27183
Homo sapiens Primates VPS34 VPS34 ncbigene_synonym PIK3C3 5289
Homo sapiens Primates GRP78,EDEMPDI,PSXBP1, GRP78 ncbigene_synonym HSPA5 3309
Homo sapiens Primates EDEM EDEM ncbigene_synonym EDEM1 9695
Homo sapiens Primates XBP1, XBP1 ncbigene_symbol XBP1 7494
Homo sapiens Primates XBP1, XBP1 ncbigene_synonym XBP1P1 7495
Homo sapiens Primates PDI, PDI ncbigene_synonym P4HB 5034
Homo sapiens Primates PDI, PDI ncbigene_synonym PADI1 29943
Homo sapiens Primates PDI, PDI ncbigene_synonym PDIA2 64714
Homo sapiens Primates GADD34. GADD34 ncbigene_synonym PPP1R15A 23645
Homo sapiens Primates CHOP,GADD34. CHOP ncbigene_synonym DDIT3 1649
Homo sapiens Primates Ag1 AG1 ncbigene_synonym TXNDC12 51060
Homo sapiens Primates Ag1 AG1 ncbigene_synonym NBPF10 100132406
Homo sapiens Primates Alg1L ALG1L ncbigene_synonym ALG1L1P 200810
Homo sapiens Primates Alg1L AIG1L ncbigene_synonym ADTRP 84830
Homo sapiens Primates Aga AGA ncbigene_symbol AGA 175
Homo sapiens Primates LCa LCA ncbigene_synonym CLTA 1211
Homo sapiens Primates LCa LCA ncbigene_synonym GUCY2D 3000
Homo sapiens Primates LCa LCA ncbigene_synonym PTPRC 5788
Cricetulus griseus Rodents Bax BAX ncbigene_symbol Bax 100689032
Cricetulus griseus Rodents TRAF2 TRAF2 ncbigene_symbol Traf2 100762099
Cricetulus griseus Rodents GRP78,EDEMPDI,PSXBP1, GRP78 ncbigene_synonym Hspa5 100689305
Cricetulus griseus Rodents EDEM EDEM ncbigene_synonym Edem1 100689456
Cricetulus griseus Rodents XBP1, XBP1 ncbigene_symbol Xbp1 100689062
Cricetulus griseus Rodents PDI, PDI ncbigene_synonym P4hb 100689433
Cricetulus griseus Rodents Aga AGA ncbigene_symbol Aga 100754017
Drosophila melanogaster Invertebrates JNK JNK ncbigene_synonym bsk 44801
Drosophila melanogaster Invertebrates TRAF2 TRAF2 ncbigene_synonym Traf6 31746
Drosophila melanogaster Invertebrates SXBP1 SXBP1 ncbigene_synonym Xbp1 44226
Drosophila melanogaster Invertebrates Cap-dependent CAP ncbigene_symbol CAP 36084
Drosophila melanogaster Invertebrates Cap-dependent CAP ncbigene_synonym SMC3 32627
Drosophila melanogaster Invertebrates Cap-dependent CAP ncbigene_synonym Cpn 41474
Drosophila melanogaster Invertebrates Cap-dependent CAP ncbigene_synonym Capa 43541
Drosophila melanogaster Invertebrates Cap-dependent CAP ncbigene_synonym capt 45233
Drosophila melanogaster Invertebrates Cap-dependent CAP ncbigene_synonym bel 45826
Drosophila melanogaster Invertebrates Cap-dependent CAP ncbigene_synonym SERCA 49297
Drosophila melanogaster Invertebrates Cap-dependent CAP ncbigene_synonym Cadps 49968
Drosophila melanogaster Invertebrates FIP200 FIP200 ncbigene_synonym Atg17 40700
Drosophila melanogaster Invertebrates P150 P150 ncbigene_synonym Gp150 37549
Drosophila melanogaster Invertebrates P150 P150 ncbigene_synonym DCTN1-p150 39536
Drosophila melanogaster Invertebrates P150 P150 ncbigene_synonym Vps15 41096
Drosophila melanogaster Invertebrates VPS4 VPS4 ncbigene_symbol Vps4 32777
Drosophila melanogaster Invertebrates VPS34 VPS34 ncbigene_synonym Pi3K59F 37733
Drosophila melanogaster Invertebrates PS PS ncbigene_symbol ps 44258
Drosophila melanogaster Invertebrates GRP78,EDEMPDI,PSXBP1, GRP78 ncbigene_synonym Hsc70-3 32133
Drosophila melanogaster Invertebrates GRP78,EDEMPDI,PSXBP1, GRP78 ncbigene_synonym Hsp70Ab 44920
Drosophila melanogaster Invertebrates PDI, PDI ncbigene_symbol Pdi 39651
Drosophila melanogaster Invertebrates GADD34. GADD34 ncbigene_synonym PPP1R15 37820
Drosophila melanogaster Invertebrates Ag1 AG1 ncbigene_synonym ArfGAP1 39417
Drosophila melanogaster Invertebrates Atgs ATG ncbigene_synonym Atg1 39454
Drosophila melanogaster Invertebrates Atgs ATG ncbigene_synonym squ 2768920
Drosophila melanogaster Invertebrates Aga AGA ncbigene_synonym tRNA:Arg-TCT-3-1 3771849
Drosophila melanogaster Invertebrates Aga AGA ncbigene_synonym tRNA:Arg-TCT-2-1 3772425
Drosophila melanogaster Invertebrates Aga AGA ncbigene_synonym tRNA:Arg-TCT-1-1 3772498
Drosophila melanogaster Invertebrates LOS LOS ncbigene_synonym mid 33770

Chemical mentions

Word Match MeSH Name ChEBI

Disease mentions

Word Match MeSH Name DOID