Cell growth on autophagy

Effects of cell growth on autophagy. Growth-dependent import of nutrients, such as amino acids and glucose, generates multiple signals that influence the induction of autophagy through their effects on pH, osmotic pressure (Π) and the electrochemical gradient (ΔΨ), as well as through several key signaling molecules such as Gcn2 (EIF2AK4 in mammals), TOR (or mTOR) and AMPK. The eIF2α kinase Gcn2 senses reduced amino acid levels through the accumulation of uncharged tRNAs, and activates autophagy-related gene expression through the transcription factor Gcn4 (ATG4 in mammals). Amino acids activate the mTOR pathway, in part, by recruiting mTOR complexes to the lysosomal surface through factors such as the Rag GTPases and p62, and through effects on intracellular lysosomal positioning. The AMP-activated protein kinase (AMPK) responds to glucose uptake, and regulates multiple downstream targets that have effects on autophagy, including mTOR, Atg1 (ULK1 in mammals) and CDKs (through cyclin kinase inhibitors; CKIs). The induction of autophagy can also be suppressed by the presence of actively translating ribosomes on the surface of the endoplasmic reticulum, which might limit the availability of sites for autophagosome nucleation. Additional components of TOR, Atg1 and Vps34 complexes are indicated. Please refer to the text for details.
Cell growth on autophagy

Publication

Autophagy and cell growth – the yin and yang of nutrient responses. (2012) Thomas P. Neufeld. J Cell Sci. 2012 May 15;125(10):2359-2368. Figure: F3.

Gene mentions


Organism Group Word Match Source NCBI Symbol NCBI ID
Drosophila melanogaster Invertebrates AMPK AMPK ncbigene_synonym SNF4Agamma 42515
Drosophila melanogaster Invertebrates AMPK AMPK ncbigene_synonym AMPKalpha 43904
Drosophila melanogaster Invertebrates TOR TOR ncbigene_symbol tor 35717
Drosophila melanogaster Invertebrates TOR TOR ncbigene_symbol Tor 47396
Drosophila melanogaster Invertebrates TOR TOR ncbigene_synonym Egfr 37455
Drosophila melanogaster Invertebrates CKI CKI ncbigene_synonym CkIalpha 32221
Drosophila melanogaster Invertebrates Vps34 VPS34 ncbigene_synonym Pi3K59F 37733
Drosophila melanogaster Invertebrates Alg1 ALG1 ncbigene_symbol Alg1 42146
Danio rerio Vertebrates TOR TOR ncbigene_synonym mtor 324254
Danio rerio Vertebrates CKI CKI ncbigene_symbol cki 30328
Danio rerio Vertebrates Alg1 ALG1 ncbigene_symbol alg1 334161
Danio rerio Vertebrates Alg1 AIG1 ncbigene_symbol aig1 562261
Caenorhabditis elegans Invertebrates Gon2 GON2 ncbigene_symbol gon-2 172646
Caenorhabditis elegans Invertebrates Vps34 VPS34 ncbigene_symbol vps-34 172280
Caenorhabditis elegans Invertebrates Alg1 ALG1 ncbigene_symbol alg-1 181504
Arabidopsis thaliana Plants and Fungi TOR TOR ncbigene_symbol TOR 841427
Arabidopsis thaliana Plants and Fungi Vps34 VPS34 ncbigene_symbol VPS34 842344
Arabidopsis thaliana Plants and Fungi Alg1 AIG1 ncbigene_symbol AIG1 840293
Homo sapiens Primates AMPK AMPK ncbigene_synonym PRKAA1 5562
Homo sapiens Primates AMPK AMPK ncbigene_synonym PRKAA2 5563
Homo sapiens Primates AMPK AMPK ncbigene_synonym PRKAB1 5564
Homo sapiens Primates AMPK AMPK famplex_relations PRKAB2 5565
Homo sapiens Primates AMPK AMPK famplex_relations PRKAG1 5571
Homo sapiens Primates AMPK AMPK famplex_relations PRKAG2 51422
Homo sapiens Primates AMPK AMPK famplex_relations PRKAG3 53632
Homo sapiens Primates TOR TOR ncbigene_synonym RORC 6097
Homo sapiens Primates CKI CKI ncbigene_synonym CHKA 1119
Homo sapiens Primates Gon2 GON2 ncbigene_synonym TRPM3 80036
Homo sapiens Primates Vps34 VPS34 ncbigene_synonym PIK3C3 5289
Homo sapiens Primates Alg1 ALG1 ncbigene_symbol ALG1 56052
Homo sapiens Primates Alg1 ALG1 famplex_relations ALG1L1P 200810
Homo sapiens Primates Alg1 ALG1 famplex_relations ALG1L2 644974
Homo sapiens Primates Alg1 ALG1 famplex_relations ALG2 85365
Homo sapiens Primates Alg1 ALG1 famplex_relations ALG11 440138
Homo sapiens Primates Alg1 ALG1 famplex_relations GLT1D1 144423
Homo sapiens Primates Alg1 ALG1 famplex_relations GTDC1 79712
Homo sapiens Primates Alg1 ALG1 famplex_relations GYS1 2997
Homo sapiens Primates Alg1 ALG1 famplex_relations GYS2 2998
Homo sapiens Primates Alg1 ALG1 famplex_relations PIGA 5277
Homo sapiens Primates Alg1 AIG1 ncbigene_symbol AIG1 51390

Chemical mentions

Word Match MeSH Name ChEBI

Disease mentions

Word Match MeSH Name DOID