Endoplasmic-Reticulum Calcium Depletion and Disease

The UPR. At a normal [Ca2+]ER the ER-stress sensors are scaffolded and inactivated by GRP78/BiP. Protein trafficking and quality-control mechanisms work normally. Polypeptides are translocated through Sec61 and glycosylated. This transport is facilitated by the molecular chaperone GRP78/BiP. Glucosidases then prepare the glycoprotein for binding to the ER lectins, calreticulin, and calnexin, whereas oxidoreductases catalyze disulfide-bond formation. ER-resident chaperones facilitate the proper folding of the nascent protein and prevent its aggregation. Further deglucosidation releases the ER lectins and once the protein is correctly folded and processed, the protein leaves the ER via the coat protein (COPII)-coated vesicles to the secretory pathway. Misfolded proteins, in contrast, associate with various chaperones, including GRP78/BiP, and are removed from the ER through ERAD. In contrast, when the [Ca2+]ER is chronically decreased, the function of chaperones becomes disturbed and unfolded proteins accumulate and act as a sponge for luminal GRP78/BiP. As a consequence, ER-stress sensors are devoid of GRP78/BiP and become activated, yielding early adaptive responses promoting survival (indicated in green) or late responses promoting apoptosis under conditions of severe or on-going ER stress (indicated in red). Ire1 undergoes dimerization and activation of its kinase and endoribonuclease activity, thereby splicing XBP1 mRNA and yielding a potent transcriptional activator that induces the expression of genes involved in ERAD, protein folding (like GRP78/BiP), and lipid synthesis. ATF6 goes to the Golgi compartment, where it is proteolytically cleaved to yield a cytosolic fragment (p50) that migrates to the nucleus and activates the transcription of UPR genes, like GRP78/BiP and CHOP. PERK dimerizes, autophosphorylates, and phosphorylates eIF2α, thereby suppressing its activity and reducing the rate of translation initiation, while increasing the rate of translation of ATF4, a potent transcription factor that augments the expression of genes involved in antioxidative stress, amino acid metabolism, and protein chaperoning. During on-going ER stress or irreparable ER damage, apoptotic pathways are activated. Ire1 phosphorylates JNK, leading to inhibition of Bcl-2 activity and activation of Bim, and recruits, releases, and activates procaspases in the cytosol. Induction of CHOP via XBP1, ATF6 or ATF4, down-regulates prosurvival Bcl-2-family members, increases prodeath proteins (like Bim) and ROS, and decreases the levels of glutathione, a ROS scavenger. In the presence of ROS, Ca2+ transfer to the mitochondria leads to the release of cytochrome c. The balance between proapoptotic and antiapoptotic Bcl-2-family members is disturbed, with activation of the intrinsic apoptotic pathway.
Endoplasmic-Reticulum Calcium Depletion and Disease

Publication

Endoplasmic-Reticulum Calcium Depletion and Disease. (2011) Djalila Mekahli, et al. Cold Spring Harb Perspect Biol. 2011 Jun;3(6):a004317. Figure: F2.

Gene mentions


Organism Group Word Match Source NCBI Symbol NCBI ID
Drosophila melanogaster Invertebrates Ire1 IRE1 ncbigene_symbol Ire1 42358
Drosophila melanogaster Invertebrates Ire1 IRE1 ncbigene_synonym crc 47767
Drosophila melanogaster Invertebrates ATF6 ATF6 ncbigene_symbol Atf6 35480
Drosophila melanogaster Invertebrates PERK PERK ncbigene_synonym PEK 40653
Drosophila melanogaster Invertebrates PERK PERK ncbigene_synonym rl 3354888
Drosophila melanogaster Invertebrates XBP1 XBP1 ncbigene_symbol Xbp1 44226
Drosophila melanogaster Invertebrates JNK-P JNK ncbigene_synonym bsk 44801
Drosophila melanogaster Invertebrates elF2a ELF2A ncbigene_synonym eIF2alpha 32617
Drosophila melanogaster Invertebrates elF2a EIF2A ncbigene_symbol eIF2A 40431
Drosophila melanogaster Invertebrates GRP78 GRP78 ncbigene_synonym Hsc70-3 32133
Drosophila melanogaster Invertebrates GRP78 GRP78 ncbigene_synonym Hsp70Ab 44920
Drosophila melanogaster Invertebrates GRP78/BIP BIP ncbigene_symbol bip 249912
Drosophila melanogaster Invertebrates Bcl-2 BCL-2 ncbigene_synonym Debcl 53585
Drosophila melanogaster Invertebrates Bcl-24 BC2 ncbigene_symbol bc2 252134
Drosophila melanogaster Invertebrates Bcl-24 BC10 ncbigene_symbol bc10 38628
Drosophila melanogaster Invertebrates Bcl-24 BC1 ncbigene_symbol BC1 5658050
Drosophila melanogaster Invertebrates p50 P50 ncbigene_synonym Hrb27C 33968
Drosophila melanogaster Invertebrates p50 P50 ncbigene_synonym betaTub60D 37888
Drosophila melanogaster Invertebrates p50 P50 ncbigene_synonym Rpt5 42805
Drosophila melanogaster Invertebrates p50 P50 ncbigene_synonym DCTN2-p50 44086
Drosophila melanogaster Invertebrates CHỌP CHP ncbigene_symbol chp 43690
Drosophila melanogaster Invertebrates CHỌP CHP ncbigene_synonym NA 31293
Drosophila melanogaster Invertebrates CHỌP CHP ncbigene_synonym mora 42874
Drosophila melanogaster Invertebrates COPI COPI ncbigene_synonym betaCOP 32820
Drosophila melanogaster Invertebrates Sec61 SEC61 ncbigene_synonym Sec61gamma 32968
Drosophila melanogaster Invertebrates Sec61 SEC61 ncbigene_synonym Sec61alpha 33905
Drosophila melanogaster Invertebrates Sec61 SEC61 ncbigene_synonym Sec61beta 46080
Homo sapiens Primates Ire1 IRE1 ncbigene_synonym ERN1 2081
Homo sapiens Primates ATF6 ATF6 ncbigene_symbol ATF6 22926
Homo sapiens Primates PERK PERK ncbigene_synonym EIF2AK3 9451
Homo sapiens Primates XBP1 XBP1 ncbigene_symbol XBP1 7494
Homo sapiens Primates XBP1 XBP1 ncbigene_synonym XBP1P1 7495
Homo sapiens Primates JNK-P JNK ncbigene_synonym MAPK8 5599
Homo sapiens Primates JNK-P JNK famplex_relations MAPK9 5601
Homo sapiens Primates JNK-P JNK famplex_relations MAPK10 5602
Homo sapiens Primates Caspase CASPASE famplex_relations CASP1 834
Homo sapiens Primates Caspase CASPASE famplex_relations CASP2 835
Homo sapiens Primates Caspase CASPASE famplex_relations CASP4 837
Homo sapiens Primates Caspase CASPASE famplex_relations CASP5 838
Homo sapiens Primates Caspase CASPASE famplex_relations CASP6 839
Homo sapiens Primates Caspase CASPASE famplex_relations CASP8 841
Homo sapiens Primates Caspase CASPASE famplex_relations CASP9 842
Homo sapiens Primates Caspase CASPASE famplex_relations CASP10 843
Homo sapiens Primates Caspase CASPASE famplex_relations CASP12 100506742
Homo sapiens Primates Caspase CASPASE famplex_relations CASP14 23581
Homo sapiens Primates Caspase CASPASE famplex_relations CASP3 836
Homo sapiens Primates Caspase CASPASE famplex_relations CASP7 840
Homo sapiens Primates elF2a EIF2A ncbigene_symbol EIF2A 83939
Homo sapiens Primates elF2a EIF2A ncbigene_synonym EIF2S1 1965
Homo sapiens Primates GRP78 GRP78 ncbigene_synonym HSPA5 3309
Homo sapiens Primates GRP78/BIP BIP ncbigene_synonym GDF10 2662
Homo sapiens Primates ATF4 ATF4 ncbigene_symbol ATF4 468
Homo sapiens Primates Bcl-2 BCL-2 ncbigene_synonym BCL2 596
Homo sapiens Primates Bcl-24 BC2 ncbigene_synonym CHMP2A 27243
Homo sapiens Primates Bcl-24 BC10 ncbigene_synonym BLCAP 10904
Homo sapiens Primates Bim BIM ncbigene_synonym BCL2L11 10018
Homo sapiens Primates p50 P50 ncbigene_synonym CD40 958
Homo sapiens Primates p50 P50 ncbigene_synonym ARHGEF7 8874
Homo sapiens Primates p50 P50 ncbigene_synonym ASCC1 51008
Homo sapiens Primates p50 P50 ncbigene_synonym H3P40 115482723
Homo sapiens Primates CHỌP CHOP ncbigene_synonym DDIT3 1649
Homo sapiens Primates CHỌP1 CHP1 ncbigene_symbol CHP1 11261
Homo sapiens Primates CHỌP1 CHP1 ncbigene_synonym CHORDC1 26973
Homo sapiens Primates NADPH NADPH ncbigene_synonym DECR1 1666
Homo sapiens Primates Sec61 SEC61 ncbigene_synonym SEC61A1 29927

Chemical mentions

Word Match MeSH Name ChEBI

Disease mentions

Word Match MeSH Name DOID