Endoplasmic-Reticulum Calcium Depletion and Disease
The UPR. At a normal [Ca2+]ER the ER-stress sensors are scaffolded and inactivated by GRP78/BiP. Protein trafficking and quality-control mechanisms work normally. Polypeptides are translocated through Sec61 and glycosylated. This transport is facilitated by the molecular chaperone GRP78/BiP. Glucosidases then prepare the glycoprotein for binding to the ER lectins, calreticulin, and calnexin, whereas oxidoreductases catalyze disulfide-bond formation. ER-resident chaperones facilitate the proper folding of the nascent protein and prevent its aggregation. Further deglucosidation releases the ER lectins and once the protein is correctly folded and processed, the protein leaves the ER via the coat protein (COPII)-coated vesicles to the secretory pathway. Misfolded proteins, in contrast, associate with various chaperones, including GRP78/BiP, and are removed from the ER through ERAD. In contrast, when the [Ca2+]ER is chronically decreased, the function of chaperones becomes disturbed and unfolded proteins accumulate and act as a sponge for luminal GRP78/BiP. As a consequence, ER-stress sensors are devoid of GRP78/BiP and become activated, yielding early adaptive responses promoting survival (indicated in green) or late responses promoting apoptosis under conditions of severe or on-going ER stress (indicated in red). Ire1 undergoes dimerization and activation of its kinase and endoribonuclease activity, thereby splicing XBP1 mRNA and yielding a potent transcriptional activator that induces the expression of genes involved in ERAD, protein folding (like GRP78/BiP), and lipid synthesis. ATF6 goes to the Golgi compartment, where it is proteolytically cleaved to yield a cytosolic fragment (p50) that migrates to the nucleus and activates the transcription of UPR genes, like GRP78/BiP and CHOP. PERK dimerizes, autophosphorylates, and phosphorylates eIF2α, thereby suppressing its activity and reducing the rate of translation initiation, while increasing the rate of translation of ATF4, a potent transcription factor that augments the expression of genes involved in antioxidative stress, amino acid metabolism, and protein chaperoning. During on-going ER stress or irreparable ER damage, apoptotic pathways are activated. Ire1 phosphorylates JNK, leading to inhibition of Bcl-2 activity and activation of Bim, and recruits, releases, and activates procaspases in the cytosol. Induction of CHOP via XBP1, ATF6 or ATF4, down-regulates prosurvival Bcl-2-family members, increases prodeath proteins (like Bim) and ROS, and decreases the levels of glutathione, a ROS scavenger. In the presence of ROS, Ca2+ transfer to the mitochondria leads to the release of cytochrome c. The balance between proapoptotic and antiapoptotic Bcl-2-family members is disturbed, with activation of the intrinsic apoptotic pathway.

Publication
Endoplasmic-Reticulum Calcium Depletion and Disease. (2011) Djalila Mekahli, et al. Cold Spring Harb Perspect Biol. 2011 Jun;3(6):a004317. Figure: F2.Organism | Group | Word | Match | Source | NCBI Symbol | NCBI ID |
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Drosophila melanogaster | Invertebrates | Ire1 | IRE1 | ncbigene_symbol | Ire1 | 42358 |
Drosophila melanogaster | Invertebrates | Ire1 | IRE1 | ncbigene_synonym | crc | 47767 |
Drosophila melanogaster | Invertebrates | ATF6 | ATF6 | ncbigene_symbol | Atf6 | 35480 |
Drosophila melanogaster | Invertebrates | PERK | PERK | ncbigene_synonym | PEK | 40653 |
Drosophila melanogaster | Invertebrates | PERK | PERK | ncbigene_synonym | rl | 3354888 |
Drosophila melanogaster | Invertebrates | XBP1 | XBP1 | ncbigene_symbol | Xbp1 | 44226 |
Drosophila melanogaster | Invertebrates | JNK-P | JNK | ncbigene_synonym | bsk | 44801 |
Drosophila melanogaster | Invertebrates | elF2a | ELF2A | ncbigene_synonym | eIF2alpha | 32617 |
Drosophila melanogaster | Invertebrates | elF2a | EIF2A | ncbigene_symbol | eIF2A | 40431 |
Drosophila melanogaster | Invertebrates | GRP78 | GRP78 | ncbigene_synonym | Hsc70-3 | 32133 |
Drosophila melanogaster | Invertebrates | GRP78 | GRP78 | ncbigene_synonym | Hsp70Ab | 44920 |
Drosophila melanogaster | Invertebrates | GRP78/BIP | BIP | ncbigene_symbol | bip | 249912 |
Drosophila melanogaster | Invertebrates | Bcl-2 | BCL-2 | ncbigene_synonym | Debcl | 53585 |
Drosophila melanogaster | Invertebrates | Bcl-24 | BC2 | ncbigene_symbol | bc2 | 252134 |
Drosophila melanogaster | Invertebrates | Bcl-24 | BC10 | ncbigene_symbol | bc10 | 38628 |
Drosophila melanogaster | Invertebrates | Bcl-24 | BC1 | ncbigene_symbol | BC1 | 5658050 |
Drosophila melanogaster | Invertebrates | p50 | P50 | ncbigene_synonym | Hrb27C | 33968 |
Drosophila melanogaster | Invertebrates | p50 | P50 | ncbigene_synonym | betaTub60D | 37888 |
Drosophila melanogaster | Invertebrates | p50 | P50 | ncbigene_synonym | Rpt5 | 42805 |
Drosophila melanogaster | Invertebrates | p50 | P50 | ncbigene_synonym | DCTN2-p50 | 44086 |
Drosophila melanogaster | Invertebrates | CHỌP | CHP | ncbigene_symbol | chp | 43690 |
Drosophila melanogaster | Invertebrates | CHỌP | CHP | ncbigene_synonym | NA | 31293 |
Drosophila melanogaster | Invertebrates | CHỌP | CHP | ncbigene_synonym | mora | 42874 |
Drosophila melanogaster | Invertebrates | COPI | COPI | ncbigene_synonym | betaCOP | 32820 |
Drosophila melanogaster | Invertebrates | Sec61 | SEC61 | ncbigene_synonym | Sec61gamma | 32968 |
Drosophila melanogaster | Invertebrates | Sec61 | SEC61 | ncbigene_synonym | Sec61alpha | 33905 |
Drosophila melanogaster | Invertebrates | Sec61 | SEC61 | ncbigene_synonym | Sec61beta | 46080 |
Homo sapiens | Primates | Ire1 | IRE1 | ncbigene_synonym | ERN1 | 2081 |
Homo sapiens | Primates | ATF6 | ATF6 | ncbigene_symbol | ATF6 | 22926 |
Homo sapiens | Primates | PERK | PERK | ncbigene_synonym | EIF2AK3 | 9451 |
Homo sapiens | Primates | XBP1 | XBP1 | ncbigene_symbol | XBP1 | 7494 |
Homo sapiens | Primates | XBP1 | XBP1 | ncbigene_synonym | XBP1P1 | 7495 |
Homo sapiens | Primates | JNK-P | JNK | ncbigene_synonym | MAPK8 | 5599 |
Homo sapiens | Primates | JNK-P | JNK | famplex_relations | MAPK9 | 5601 |
Homo sapiens | Primates | JNK-P | JNK | famplex_relations | MAPK10 | 5602 |
Homo sapiens | Primates | Caspase | CASPASE | famplex_relations | CASP1 | 834 |
Homo sapiens | Primates | Caspase | CASPASE | famplex_relations | CASP2 | 835 |
Homo sapiens | Primates | Caspase | CASPASE | famplex_relations | CASP4 | 837 |
Homo sapiens | Primates | Caspase | CASPASE | famplex_relations | CASP5 | 838 |
Homo sapiens | Primates | Caspase | CASPASE | famplex_relations | CASP6 | 839 |
Homo sapiens | Primates | Caspase | CASPASE | famplex_relations | CASP8 | 841 |
Homo sapiens | Primates | Caspase | CASPASE | famplex_relations | CASP9 | 842 |
Homo sapiens | Primates | Caspase | CASPASE | famplex_relations | CASP10 | 843 |
Homo sapiens | Primates | Caspase | CASPASE | famplex_relations | CASP12 | 100506742 |
Homo sapiens | Primates | Caspase | CASPASE | famplex_relations | CASP14 | 23581 |
Homo sapiens | Primates | Caspase | CASPASE | famplex_relations | CASP3 | 836 |
Homo sapiens | Primates | Caspase | CASPASE | famplex_relations | CASP7 | 840 |
Homo sapiens | Primates | elF2a | EIF2A | ncbigene_symbol | EIF2A | 83939 |
Homo sapiens | Primates | elF2a | EIF2A | ncbigene_synonym | EIF2S1 | 1965 |
Homo sapiens | Primates | GRP78 | GRP78 | ncbigene_synonym | HSPA5 | 3309 |
Homo sapiens | Primates | GRP78/BIP | BIP | ncbigene_synonym | GDF10 | 2662 |
Homo sapiens | Primates | ATF4 | ATF4 | ncbigene_symbol | ATF4 | 468 |
Homo sapiens | Primates | Bcl-2 | BCL-2 | ncbigene_synonym | BCL2 | 596 |
Homo sapiens | Primates | Bcl-24 | BC2 | ncbigene_synonym | CHMP2A | 27243 |
Homo sapiens | Primates | Bcl-24 | BC10 | ncbigene_synonym | BLCAP | 10904 |
Homo sapiens | Primates | Bim | BIM | ncbigene_synonym | BCL2L11 | 10018 |
Homo sapiens | Primates | p50 | P50 | ncbigene_synonym | CD40 | 958 |
Homo sapiens | Primates | p50 | P50 | ncbigene_synonym | ARHGEF7 | 8874 |
Homo sapiens | Primates | p50 | P50 | ncbigene_synonym | ASCC1 | 51008 |
Homo sapiens | Primates | p50 | P50 | ncbigene_synonym | H3P40 | 115482723 |
Homo sapiens | Primates | CHỌP | CHOP | ncbigene_synonym | DDIT3 | 1649 |
Homo sapiens | Primates | CHỌP1 | CHP1 | ncbigene_symbol | CHP1 | 11261 |
Homo sapiens | Primates | CHỌP1 | CHP1 | ncbigene_synonym | CHORDC1 | 26973 |
Homo sapiens | Primates | NADPH | NADPH | ncbigene_synonym | DECR1 | 1666 |
Homo sapiens | Primates | Sec61 | SEC61 | ncbigene_synonym | SEC61A1 | 29927 |
Word | Match | MeSH | Name | ChEBI |
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Disease mentions
Word | Match | MeSH | Name | DOID |
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