Chromatin remodelling during development

ESCs are characterized by hyperdynamic chromatin, which is compacted when these cells exit from their pluripotent state and differentiate into cells of multiple lineages. In the self-renewing state, chromatin remodellers are required to prevent this chromatin compaction (CHD1) and to repress and refine the inappropriate expression of genes (esBAF and the TIP60-p400 complex) that would otherwise be allowed by the permissive chromatin landscape. Exit from this self-renewing state into a state that allows multilineage commitment involves global changes in chromatin configuration, such as the formation of heterochromatin and the silencing of pluripotency genes (BAF complexes and NURD complexes), and key signalling events (bone-morphogenetic-protein-mediated signalling pathway and NURF complexes). Not surprisingly, evidence is emerging that chromatin remodellers such as BAF complexes (by way of an unknown mechanism) are crucial for the reversal of development and the reactivation of pluripotency genes such as Oct4, which occurs during the nuclear reprogramming of a committed cell type back into an ESC-like state. The proteins known to be involved are listed, together with the chromatin-remodelling complex they are found in (CHD, orange; SWI/SNF, green; ISWI, yellow; and INO80, pink).
Chromatin remodelling during development

Publication

Chromatin remodelling during development. () Lena Ho, et al. Nature. ;463(7280):474-484. Figure: F3.

Gene mentions


Organism Group Word Match Source NCBI Symbol NCBI ID
Homo sapiens Primates BPTF BPTF ncbigene_symbol BPTF 2186
Homo sapiens Primates BRG1, BRG1 ncbigene_synonym SMARCA4 6597
Homo sapiens Primates BRG1,BAF155, BAF155 ncbigene_synonym SMARCC1 6599
Homo sapiens Primates BAF250A BAF250A ncbigene_synonym ARID1A 8289
Homo sapiens Primates BAF57,BAF155 BAF57 ncbigene_synonym SMARCE1 6605
Homo sapiens Primates CHD1 CHD1 ncbigene_symbol CHD1 1105
Homo sapiens Primates (BAF BAF ncbigene_synonym BANF1 8815
Homo sapiens Primates MBD3 MBD3 ncbigene_symbol MBD3 53615
Homo sapiens Primates MBD3 MBD3 ncbigene_synonym DPEP3 64180
Homo sapiens Primates OCT4 OCT4 ncbigene_synonym POU5F1 5460
Homo sapiens Primates OCT4 OCT4 ncbigene_synonym POU5F1P3 642559
Homo sapiens Primates OCT4 OCT4 ncbigene_synonym POU5F1P4 645682
Homo sapiens Primates SOX2 SOX2 ncbigene_symbol SOX2 6657
Homo sapiens Primates Nanog NANOG ncbigene_symbol NANOG 79923
Homo sapiens Primates ESCS ESCS ncbigene_synonym NR2E3 10002

Chemical mentions

Word Match MeSH Name ChEBI

Disease mentions

Word Match MeSH Name DOID