Stimuli and factors involved in yeast chronological aging

The process of chronological aging ultimately relies on a cell's decision to stall or promote its growth in a given scenario. If growth is inhibited, for instance due to low nutrient availability (caloric restriction), the cell enters a state of low metabolic activity (quiescence), thus arresting the aging process (antiaging). If nutrients are available the cell activates growth progression, elevates metabolic rates, promotes its reproduction and progressively ages (non-quiescence or senescence), eventually culminating in its demise (proaging).Consequently, glucose availability has a major impact on longevity, specifically via the Tor-Sch9p and Ras2-PKA pathways, which require the serine-threonine kinase Rim15p and the transcription factors Gis1p, Msn2p and Msn4p to regulate expression of stress response genes. While longevity is promoted upon low glucose availability (↓glucose → ↓Tor/Sch9p/Ras2 → ↑stress response), it is shortened when glucose availability is high (↑glucose → ↑Tor/Sch9p/Ras2 → ↓stress response). Stress response is also regulated via other factors like the transcription factor Yap1p or the histone deacetylase Sir2.The Tor1p kinase is also involved in the regulation of autophagy, a self-recycling pathway under nutrient starvation. Upregulation of autophagy may occur via inhibition of the Tor1p kinase (for instance with rapamycin) or elevation of intracellular spermidine levels (by external supplementation or internal regulation mechanisms still to be discerned). Spermidine, which induces autophagy via inhibition of histone acetyl transferases (HATs) and resulting histone hypoacetylation, could also regulate longevity via autophagy-independent alternative pathways. In addition, chronological lifespan is extended by increased availability of branched side chain amino acids (BCAA; leucine, isoleucine and valine) and a rise in synthesis and release of glycerol, which in turn is inhibited by sustained growth signalling (see text).On the other hand, under conditions where chronological aging is promoted ethanol is metabolized to acetate, which acts as a proaging trigger, in part by influencing internal and external pH as well as TOR signaling. Additionally, growth signaling leads to cell cycle progression and replication stress. Chronological aging-induced cell death has been shown to be regulated by a number of mitochondrial, nuclear and cytosolic lethal effectors and might also involve further factors associated with the yeast apoptotic machinery.
Stimuli and factors involved in yeast chronological aging

Publication

The sweet taste of death: glucose triggers apoptosis during yeast chronological aging. (2010) Christoph Ruckenstuhl, et al. Aging (Albany NY). 2010 Oct;2(10):643-649. Figure: F1.

Gene mentions


Organism Group Word Match Source NCBI Symbol NCBI ID
Mus musculus Rodents BCAA BCAA ncbigene_synonym Arid4b 94246
Mus musculus Rodents AMID AMID ncbigene_synonym Aifm2 71361
Mus musculus Rodents TH,O2 TO2 ncbigene_synonym Cat5 109748
Mus musculus Rodents TH,O2 TH ncbigene_symbol Th 21823
Mus musculus Rodents EndoG ENDOG ncbigene_symbol Endog 13804
Mus musculus Rodents HtrA2/Omi HTRA2 ncbigene_symbol Htra2 64704
Homo sapiens Primates BCAA BCAA ncbigene_synonym ARID4B 51742
Homo sapiens Primates PKA PKA famplex_relations PRKAR1A 5573
Homo sapiens Primates PKA PKA famplex_relations PRKAR1B 5575
Homo sapiens Primates PKA PKA famplex_relations PRKAR2A 5576
Homo sapiens Primates PKA PKA famplex_relations PRKAR2B 5577
Homo sapiens Primates PKA PKA famplex_relations PRKACA 5566
Homo sapiens Primates PKA PKA famplex_relations PRKACB 5567
Homo sapiens Primates PKA PKA famplex_relations PRKACG 5568
Homo sapiens Primates Caspase CASPASE famplex_relations CASP1 834
Homo sapiens Primates Caspase CASPASE famplex_relations CASP2 835
Homo sapiens Primates Caspase CASPASE famplex_relations CASP4 837
Homo sapiens Primates Caspase CASPASE famplex_relations CASP5 838
Homo sapiens Primates Caspase CASPASE famplex_relations CASP6 839
Homo sapiens Primates Caspase CASPASE famplex_relations CASP8 841
Homo sapiens Primates Caspase CASPASE famplex_relations CASP9 842
Homo sapiens Primates Caspase CASPASE famplex_relations CASP10 843
Homo sapiens Primates Caspase CASPASE famplex_relations CASP12 100506742
Homo sapiens Primates Caspase CASPASE famplex_relations CASP14 23581
Homo sapiens Primates Caspase CASPASE famplex_relations CASP3 836
Homo sapiens Primates Caspase CASPASE famplex_relations CASP7 840
Homo sapiens Primates AMID AMID ncbigene_synonym AIFM2 84883
Homo sapiens Primates TH,O2 TH ncbigene_symbol TH 7054
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMA1 5682
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMA2 5683
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMA3 5684
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMA4 5685
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMA5 5686
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMA6 5687
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMA7 5688
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMA8 143471
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMB1 5689
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMB10 5699
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMB2 5690
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMB3 5691
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMB4 5692
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMB5 5693
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMB6 5694
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMB7 5695
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMB8 5696
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMB9 5698
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMC1 5700
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMC2 5701
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMC3 5702
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMC4 5704
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMC5 5705
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMC6 5706
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMD1 5707
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMD10 5716
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMD11 5717
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMD12 5718
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMD13 5719
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMD14 10213
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMD2 5708
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMD3 5709
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMD4 5710
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMD5 5711
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMD6 9861
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMD7 5713
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMD8 5714
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMD9 5715
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSME1 5720
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSME2 5721
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSME3 10197
Homo sapiens Primates Proteasome PROTEASOME famplex_relations PSMF1 9491
Homo sapiens Primates Proteasome PROTEASOME famplex_relations SEM1 7979
Homo sapiens Primates Proteasome PROTEASOME famplex_relations USP5 8078
Homo sapiens Primates EndoG ENDOG ncbigene_symbol ENDOG 2021
Homo sapiens Primates HtrA2/Omi HTRA2 ncbigene_symbol HTRA2 27429
Drosophila melanogaster Invertebrates PKA PKA ncbigene_synonym Pka-C1 34284
Drosophila melanogaster Invertebrates PKA PKA ncbigene_synonym Pka-R2 36041
Drosophila melanogaster Invertebrates PKA PKA ncbigene_synonym Pka-C3 39733
Drosophila melanogaster Invertebrates PKA PKA ncbigene_synonym Pka-R1 40305
Drosophila melanogaster Invertebrates PKA PKA ncbigene_synonym Pka-C2 43644
Drosophila melanogaster Invertebrates TH,O2 THO2 ncbigene_symbol tho2 326153
Drosophila melanogaster Invertebrates EndoG ENDOG ncbigene_symbol EndoG 36309
Drosophila melanogaster Invertebrates HtrA2/Omi HTRA2/OMI ncbigene_synonym HtrA2 41756

Chemical mentions

Word Match MeSH Name ChEBI
Acetate Acetates mesh:D000085 acetate ester chebi:47622
Ethanol Ethanol mesh:D000431 ethanol chebi:16236
Glucose Glucose mesh:D005947 D-glucopyranose chebi:4167
Glycerol Glycerol mesh:D005990 glycerol chebi:17754
Spermidine Spermidine mesh:D013095 spermidine chebi:16610
Rapamycin Sirolimus mesh:D020123 sirolimus chebi:9168

Disease mentions

Word Match MeSH Name DOID