Anaerobic metabolic pathways in C

Anaerobic metabolic pathways in C. reinhardtii. Pathways at the upper right are proposed for succinate production and NADH reoxidation in the hydEF-1 mutant. Proteins encoded in the C. reinhardtii genome that are associated with the metabolisms depicted include the following: ACK, acetate kinase; ADH, bifunctional acetylaldehyde/alcohol dehydrogenase (alcohol dehydrogenase only in the case of the PDC pathway); FDX, ferredoxin; FMR, fumarate reductase; FUM, fumarase; HYD, hydrogenase; MDH, malate dehydrogenase; MME, malic enzyme; PAT, phosphate acetyltransferase; PDC, pyruvate decarboxylase; PEPC, phosphoenolpyruvate carboxylase; PFL, pyruvate formate-lyase; PFR, pyruvate-ferredoxin oxidoreductase; PYC, pyruvate carboxylase; PYK, pyruvate kinase. Known or putative cellular localizations of the proteins depicted are coded by color as follows: green for the chloroplast, red for the mitochondrion, orange for dual chloroplast/mitochondrion localization, blue for cytoplasm, and black for unknown. The cellular localizations of MDH1, -3, and -4, ACK2, PFL, and PAT1 were experimentally determined by Allmer et al. () and Atteia et al. (), respectively. The cellular localizations of the other enzymes were determined using ChloroP, TargetP, and Predotar softwares and are highly speculative. When possible a final predicted localization was determined by doing an average of all predictions.
Anaerobic metabolic pathways in C

Publication

Flexibility in Anaerobic Metabolism as Revealed in a Mutant of Chlamydomonas reinhardtii Lacking Hydrogenase Activity. (2009) Alexandra Dubini, et al. J Biol Chem. 2009 Mar 13;284(11):7201-7213. Figure: F1.

Gene mentions


Organism Group Word Match Source NCBI Symbol NCBI ID
Drosophila melanogaster Invertebrates ADP ADP ncbigene_symbol adp 37073
Drosophila melanogaster Invertebrates MDH1, MDH1 ncbigene_symbol Mdh1 34414
Drosophila melanogaster Invertebrates MDH1,2,3,4,5 MDH2 ncbigene_symbol Mdh2 42185
Drosophila melanogaster Invertebrates FUM1,2 FUM1 ncbigene_symbol Fum1 31605
Drosophila melanogaster Invertebrates FUM1,2 FUM2 ncbigene_symbol Fum2 31606
Drosophila melanogaster Invertebrates FMR FMR ncbigene_synonym Fmr1 37528
Drosophila melanogaster Invertebrates ATP ATP ncbigene_synonym ATPsynbeta 43829
Drosophila melanogaster Invertebrates ATP ATP ncbigene_synonym Atpalpha 48971
Drosophila melanogaster Invertebrates MME1,2,3,4,5,6 MME1 ncbigene_symbol MME1 33987
Drosophila melanogaster Invertebrates FOXD FOXD ncbigene_synonym fd59A 37631
Drosophila melanogaster Invertebrates HYD HYD ncbigene_symbol hyd 41181
Drosophila melanogaster Invertebrates Pi PI ncbigene_symbol pi 5656965
Drosophila melanogaster Invertebrates PAT1( PAT1 ncbigene_symbol Pat1 31593
Drosophila melanogaster Invertebrates ADH ADH ncbigene_symbol Adh 3771877
Drosophila melanogaster Invertebrates (ACK2 ACK2 ncbigene_synonym Ack 38489
Drosophila melanogaster Invertebrates (ACK2 ACK2 ncbigene_synonym CkIIalpha 48448
Homo sapiens Primates NAD(P)H NADPH ncbigene_synonym DECR1 1666
Homo sapiens Primates ADP ADP ncbigene_synonym WDTC1 23038
Homo sapiens Primates MDH1, MDH1 ncbigene_symbol MDH1 4190
Homo sapiens Primates MDH1,2,3,4,5 MDH2 ncbigene_symbol MDH2 4191
Homo sapiens Primates ATP ATP ncbigene_synonym ATP8A2 51761
Homo sapiens Primates PYK1,2,3,4,5,6 PYK2 ncbigene_synonym PTK2B 2185
Homo sapiens Primates PDC PDC ncbigene_symbol PDC 5132
Homo sapiens Primates PDC PDC ncbigene_synonym PNKD 25953
Homo sapiens Primates FOXD FOXD famplex_relations FOXD1 2297
Homo sapiens Primates FOXD FOXD famplex_relations FOXD2 2306
Homo sapiens Primates FOXD FOXD famplex_relations FOXD3 27022
Homo sapiens Primates FOXD FOXD famplex_relations FOXD4 2298
Homo sapiens Primates FOXD FOXD famplex_relations FOXD4L1 200350
Homo sapiens Primates FOXD FOXD famplex_relations FOXD4L3 286380
Homo sapiens Primates FOXD FOXD famplex_relations FOXD4L4 349334
Homo sapiens Primates FOXD FOXD famplex_relations FOXD4L5 653427
Homo sapiens Primates FOXD FOXD famplex_relations FOXD4L6 653404
Homo sapiens Primates PFL PFL ncbigene_synonym PFN2 5217
Homo sapiens Primates HYD HYD ncbigene_synonym UBR5 51366
Homo sapiens Primates PAT2 PAT2 ncbigene_synonym SLC36A2 153201
Homo sapiens Primates PAT1( PAT1 ncbigene_synonym APPBP2 10513
Homo sapiens Primates PAT1( PAT1 ncbigene_synonym SLC36A1 206358
Homo sapiens Primates ADH ADH ncbigene_synonym AVP 551
Homo sapiens Primates ADH ADH famplex_relations ADH1A 124
Homo sapiens Primates ADH ADH famplex_relations ADH1B 125
Homo sapiens Primates ADH ADH famplex_relations ADH1C 126
Homo sapiens Primates ADH ADH famplex_relations ADH4 127
Homo sapiens Primates ADH ADH famplex_relations ADH5 128
Homo sapiens Primates ADH ADH famplex_relations ADH6 130
Homo sapiens Primates ADH ADH famplex_relations ADH7 131
Homo sapiens Primates ADH ADH famplex_relations ADHFE1 137872
Homo sapiens Primates ACK1 ACK1 ncbigene_synonym TNK2 10188

Chemical mentions

Word Match MeSH Name ChEBI
acetaldehyde Acetaldehyde mesh:D000079 acetaldehyde chebi:15343
Oxalo-acetate Acetates mesh:D000085 acetate ester chebi:47622
acetate Acetates mesh:D000085 acetate ester chebi:47622
ethanol Ethanol mesh:D000431 ethanol chebi:16236
formate NA mesh:D005561
malate Malates mesh:D008293 malate chebi:25115

Disease mentions

Word Match MeSH Name DOID