Biosynthesis of isoprenoids in halophilic archaea

Biosynthesis of isoprenoids in halophilic archaea. The isoprenoid precursor IPP is synthesized via the mevalonate pathway as shown by labeling studies (green reaction exists, red reaction absent, bold experimental verification). Various isoprenoids detected in membranes of H. salinarum (listed in boxes) are synthesized by a series of condensation reactions with IPP, which is added in head–tail (HT) or head–head (HH) fashion, and through desaturase reactions ([2H]). Enzyme gene sets for isoprenoid synthesis differ only slightly between halorarchaea (square: H. marismortui, circle: H. walsbyi, diamond: N. pharaonis, triangle: H. salinarum, green gene exists, red gene absent). Bacterial- (B) or archaeal-type (A) enzyme variants are indicated. Superscript “a” indicates C5-prenyl units are synthesized via the mevalonate pathway starting from two acetyl-CoA molecules and a still unknown C2-unit arising from amino acid degradation (Ekiel et al. )
Biosynthesis of isoprenoids in halophilic archaea

Publication

Metabolism of halophilic archaea. (2008) Michaela Falb, et al. Extremophiles. 2008 Mar;12(2):177-196. Figure: F3.

Gene mentions


Organism Group Word Match Source NCBI Symbol NCBI ID
Homo sapiens Primates HT HT ncbigene_symbol HT 140805
Homo sapiens Primates IPP IPP ncbigene_symbol IPP 3652
Homo sapiens Primates FPP FPP ncbigene_synonym MSX2 4488
Homo sapiens Primates all ALL ncbigene_synonym BCR 613
Homo sapiens Primates all A11 ncbigene_synonym IGKV3D-20 28874
Homo sapiens Primates trans TRAN ncbigene_synonym TRA-TGC7-1 7154
Homo sapiens Primates di-trans,cis CIS ncbigene_synonym CISH 1154
Homo sapiens Primates GFPP GFPP ncbigene_synonym FPGT 8790
Homo sapiens Primates (C-C) CC ncbigene_synonym CXCR1 3577
Drosophila melanogaster Invertebrates IPP IPP ncbigene_symbol Ipp 41701
Drosophila melanogaster Invertebrates IPP IPP ncbigene_synonym CG9784 32629
Drosophila melanogaster Invertebrates IPP IPP ncbigene_synonym CG9426 34719
Drosophila melanogaster Invertebrates IPP IPP ncbigene_synonym CG6805 36911
Drosophila melanogaster Invertebrates IPP IPP ncbigene_synonym Synj 37517
Drosophila melanogaster Invertebrates IPP IPP ncbigene_synonym INPP5E 39404
Drosophila melanogaster Invertebrates IPP IPP ncbigene_synonym 5PtaseI 326119
Drosophila melanogaster Invertebrates GPP GPP ncbigene_symbol gpp 40793
Drosophila melanogaster Invertebrates HH HH ncbigene_symbol hh 42737
Drosophila melanogaster Invertebrates all ALI ncbigene_symbol ali 5658436
Drosophila melanogaster Invertebrates all ALI ncbigene_synonym alpha-Est7 40901
Drosophila melanogaster Invertebrates all A11 ncbigene_synonym gus 35478
Drosophila melanogaster Invertebrates (Ca) CA ncbigene_symbol ca 43518
Drosophila melanogaster Invertebrates side SIDE ncbigene_symbol side 43300
Drosophila melanogaster Invertebrates side SIDE ncbigene_synonym Sidpn 35168
Drosophila melanogaster Invertebrates as AS ncbigene_symbol as 45825

Chemical mentions

Word Match MeSH Name ChEBI
acetoacetyl-CoA HMG-CoA NA mesh:C010667
prenyl NA mesh:C016077
phytoene NA mesh:C100185
dolichol Dolichols mesh:D004286 dolichol chebi:16091
Mevalonate NA mesh:D008798
mevalonate NA mesh:D008798
retinal Retinaldehyde mesh:D012172 all-trans-retinal chebi:17898
squalene Squalene mesh:D013185 squalene chebi:15440
beta-carotene beta Carotene mesh:D019207 beta-carotene chebi:17579
menaquinones NA mesh:D024482

Disease mentions

Word Match MeSH Name DOID