Ubiquitin Signaling in the NFKB Pathway

Polyubiquitination by TRAF2 and TRAF6 not only mediates signaling by TNFR, IL1R and TLR (see ) in the innate immunity pathways, but also plays an important role in adaptive immune responses by activating IKK in response to stimulation of TCR. In T cells, BCL10 and MALT1 activate the ligase activity of TRAF6 (and possibly TRAF2), to catalyze the K63-linked polyubiquitination of NEMO and TRAF6 itself. These ubiquitination events mediate the activation of TAK1 and IKK. NOD2 and RIP2, which trigger innate immune responses against intracellular bacteria, also facilitate the K63-linked polyubiquitination of NEMO. DNA damage leads to the sumoylation and subsequent ubiquitination of NEMO in the nucleus. The ubiquitinated NEMO then exits the nucleus and associates with the other subunits of the cytosolic IKK complex, resulting in IKK activation. Some receptors of the TLR family, including TLR7, 8 and 9, are localized in the endosomal membrane. Stimulation of TLR7/8 and TLR9 by viral RNA and CpG DNA, respectively, leads to the activation of both NF-κB and IRF7, which coordinately regulate interferon production. IRF7 binds to MyD88, which is associated with the endosomal TLRs as well as IRAK and TRAF6. TRAF6 polyubiquitination is required for the activation of IRF7, presumably by promoting the phosphorylation and subsequent nuclear translocation of IRF7.
Ubiquitin Signaling in the NFKB Pathway

Publication

Ubiquitin Signaling in the NF-κB Pathway. () Zhijian J. Chen. Nat Cell Biol. ;7(8):758-765. Figure: F4.

Gene mentions


Organism Group Word Match Source NCBI Symbol NCBI ID
Danio rerio Vertebrates IL1R/TLR IL1R ncbigene_synonym il1rl1 407649
Danio rerio Vertebrates BCL10/MALT1 BCL10 ncbigene_symbol bcl10 100334750
Danio rerio Vertebrates BCL10/MALT1 MALT1 ncbigene_symbol malt1 561914
Danio rerio Vertebrates BCL10/MALT1 MALT1 ncbigene_synonym malt2 259196
Danio rerio Vertebrates MyD88 MYD88 ncbigene_symbol myd88 403145
Danio rerio Vertebrates TRADD TRADD ncbigene_symbol tradd 58130
Danio rerio Vertebrates TRAF6 TRAF6 ncbigene_symbol traf6 554561
Danio rerio Vertebrates TLR7/9 TLR9 ncbigene_symbol tlr9 403128
Danio rerio Vertebrates TLR7/9 TLR7 ncbigene_symbol tlr7 100534776
Danio rerio Vertebrates IRF-7 IRF7 ncbigene_symbol irf7 393650
Danio rerio Vertebrates NEMO NEMO ncbigene_synonym ikbkg 541530
Danio rerio Vertebrates Nod2 NOD2 ncbigene_symbol nod2 777696
Homo sapiens Primates IL1R/TLR TLR famplex_relations TLR1 7096
Homo sapiens Primates IL1R/TLR TLR famplex_relations TLR2 7097
Homo sapiens Primates IL1R/TLR TLR famplex_relations TLR3 7098
Homo sapiens Primates IL1R/TLR TLR famplex_relations TLR4 7099
Homo sapiens Primates IL1R/TLR TLR famplex_relations TLR5 7100
Homo sapiens Primates IL1R/TLR TLR famplex_relations TLR6 10333
Homo sapiens Primates IL1R/TLR TLR famplex_relations TLR7 51284
Homo sapiens Primates IL1R/TLR TLR famplex_relations TLR8 51311
Homo sapiens Primates IL1R/TLR TLR famplex_relations TLR9 54106
Homo sapiens Primates IL1R/TLR TLR famplex_relations TLR10 81793
Homo sapiens Primates IL1R/TLR IL1R ncbigene_synonym IL1R1 3554
Homo sapiens Primates TCR TCR ncbigene_synonym TRBV20OR9-2 6962
Homo sapiens Primates TCR TCR famplex_relations TRA 6955
Homo sapiens Primates TCR TCR famplex_relations TRB 6957
Homo sapiens Primates TCR TCR famplex_relations TRD 6964
Homo sapiens Primates TCR TCR famplex_relations TRG 6965
Homo sapiens Primates TNFR TNFR ncbigene_synonym TNFRSF1A 7132
Homo sapiens Primates BCL10/MALT1 BCL10 ncbigene_symbol BCL10 8915
Homo sapiens Primates BCL10/MALT1 MALT1 ncbigene_symbol MALT1 10892
Homo sapiens Primates MyD88 MYD88 ncbigene_symbol MYD88 4615
Homo sapiens Primates IRAK IRAK ncbigene_synonym IRAK1 3654
Homo sapiens Primates TRADD TRADD ncbigene_symbol TRADD 8717
Homo sapiens Primates TRAF2 TRAF2 ncbigene_symbol TRAF2 7186
Homo sapiens Primates TRAF2 TRAF2 ncbigene_synonym TANK 10010
Homo sapiens Primates RIP RIP ncbigene_synonym AGFG1 3267
Homo sapiens Primates RIP RIP ncbigene_synonym RIPK1 8737
Homo sapiens Primates RIP RIP ncbigene_synonym DCAF1 9730
Homo sapiens Primates RIP RIP ncbigene_synonym RPAIN 84268
Homo sapiens Primates TRAF6 TRAF6 ncbigene_symbol TRAF6 7189
Homo sapiens Primates TAK1 TAK1 ncbigene_synonym MAP3K7 6885
Homo sapiens Primates TAK1 TAK1 ncbigene_synonym NR2C2 7182
Homo sapiens Primates TAB TAB famplex_relations TAB1 10454
Homo sapiens Primates TAB TAB famplex_relations TAB2 23118
Homo sapiens Primates TAB TAB famplex_relations TAB3 257397
Homo sapiens Primates IRF-7 IRF-7 ncbigene_synonym IRF7 3665
Homo sapiens Primates NEMO NEMO ncbigene_synonym IKBKG 8517
Homo sapiens Primates Nod2 NOD2 ncbigene_symbol NOD2 64127
Homo sapiens Primates RIP2 RIP2 ncbigene_synonym RIPK2 8767
Homo sapiens Primates RIP2 RIP2 ncbigene_synonym ARHGEF28 64283
Homo sapiens Primates IKKa IKKA ncbigene_synonym CHUK 1147
Homo sapiens Primates IKKB IKKB ncbigene_synonym IKBKB 3551
Homo sapiens Primates IKB/NFKB NFKB ncbigene_synonym NFKB1 4790
Homo sapiens Primates IKB/NFKB NFKB famplex_relations RELA 5970
Homo sapiens Primates IKB/NFKB NFKB famplex_relations RELB 5971
Homo sapiens Primates IKB/NFKB NFKB famplex_relations REL 5966
Homo sapiens Primates IKB/NFKB NFKB famplex_relations NFKB2 4791

Chemical mentions

Word Match MeSH Name ChEBI

Disease mentions

Word Match MeSH Name DOID