Systemic sclerosis, recognized as a prototypical autoimmune disease, is intricately governed by a myriad of autoimmune mechanisms

Systemic sclerosis, recognized as a prototypical autoimmune disease, is intricately governed by a myriad of autoimmune mechanisms. Among these, the major histocompatibility complex (MHC) class I and class II play a pivotal role in the precise presentation of both antigens and autoantigens. Various combinations of MHC I and MHC II alleles have been correlated with the susceptibility to disease onset and the manifestation of specific disease subtypes. Antigen presentation occurs within the context of MHC class I and II molecules, subsequently eliciting responses from CD8 and CD4 T cells, respectively. Co-receptor molecules, such as Ox40L for CD8 T cells, and CD2 and CD247 for CD4 cells, orchestrate proper co-stimulation, culminating in the orchestration of the final immune response. Genetic variability within the interferon system has been extensively documented. Commencing from genes responsible for Toll-like receptor (TLR) encoding, traversing through the intricate signaling cascades mediated by NFκB, and culminating in genetic variations in interferon regulatory factors. A multitude of cytokines are implicated in the pathogenesis of systemic sclerosis, including those operating via the JAK/STAT signaling pathway (e.g., IL-12). Genetic polymorphisms within genes encoding IL-12 receptor, TYK2, and STAT molecules have been associated with the susceptibility to systemic sclerosis development. Similar associations are observed concerning other cytokines such as IL1 (IRAK SNP) and the macrophage migration inhibitory factor (gene promoter of MIF)
Systemic sclerosis, recognized as a prototypical autoimmune disease, is intricately governed by a myriad of autoimmune mechanisms

Publication

Immunogenetics of Systemic Sclerosis (2024) Olga Gumkowska-Sroka, et al. Genes (Basel). 2024 May;15(5). Figure: F1.

Gene mentions


Organism Group Word Match Source NCBI Symbol NCBI ID
Homo sapiens Primates TNFR TNFR ncbigene_synonym TNFRSF1A 7132
Homo sapiens Primates A20 A20 ncbigene_synonym TNFAIP3 7128
Homo sapiens Primates A20 A20 ncbigene_synonym IGKV1-27 28935
Homo sapiens Primates MHC MHC ncbigene_synonym HLA-C 3107
Homo sapiens Primates TNFSF4 TNFSF4 ncbigene_symbol TNFSF4 7292
Homo sapiens Primates CD8 CD8 ncbigene_synonym CD8A 925
Homo sapiens Primates CD8 CD8 famplex_relations CD8B 926
Homo sapiens Primates TYK2 TYK2 ncbigene_symbol TYK2 7297
Homo sapiens Primates JAK JAK famplex_relations JAK1 3716
Homo sapiens Primates JAK JAK famplex_relations JAK2 3717
Homo sapiens Primates JAK JAK famplex_relations JAK3 3718
Homo sapiens Primates STAT STAT ncbigene_synonym SOAT1 6646
Homo sapiens Primates STAT STAT famplex_relations STAT1 6772
Homo sapiens Primates STAT STAT famplex_relations STAT2 6773
Homo sapiens Primates STAT STAT famplex_relations STAT3 6774
Homo sapiens Primates STAT STAT famplex_relations STAT4 6775
Homo sapiens Primates STAT STAT famplex_relations STAT6 6778
Homo sapiens Primates STAT STAT famplex_relations STAT5A 6776
Homo sapiens Primates STAT STAT famplex_relations STAT5B 6777
Homo sapiens Primates APC APC ncbigene_symbol APC 324
Homo sapiens Primates APC APC ncbigene_synonym PROC 5624
Homo sapiens Primates TCR TCR ncbigene_synonym TRBV20OR9-2 6962
Homo sapiens Primates TCR TCR famplex_relations TRA 6955
Homo sapiens Primates TCR TCR famplex_relations TRB 6957
Homo sapiens Primates TCR TCR famplex_relations TRD 6964
Homo sapiens Primates TCR TCR famplex_relations TRG 6965
Homo sapiens Primates L12 L12 ncbigene_synonym RPL12 6136
Homo sapiens Primates L12 L12 ncbigene_synonym RSL1D1 26156
Homo sapiens Primates L12 L12 ncbigene_synonym IGKV1-5 28299
Homo sapiens Primates Interferon INTERFERON famplex_relations IFNK 56832
Homo sapiens Primates Interferon INTERFERON famplex_relations IFNW1 3467
Homo sapiens Primates Interferon INTERFERON famplex_relations IFNA1 3439
Homo sapiens Primates Interferon INTERFERON famplex_relations IFNA2 3440
Homo sapiens Primates Interferon INTERFERON famplex_relations IFNA4 3441
Homo sapiens Primates Interferon INTERFERON famplex_relations IFNA5 3442
Homo sapiens Primates Interferon INTERFERON famplex_relations IFNA6 3443
Homo sapiens Primates Interferon INTERFERON famplex_relations IFNA7 3444
Homo sapiens Primates Interferon INTERFERON famplex_relations IFNA8 3445
Homo sapiens Primates Interferon INTERFERON famplex_relations IFNA10 3446
Homo sapiens Primates Interferon INTERFERON famplex_relations IFNA13 3447
Homo sapiens Primates Interferon INTERFERON famplex_relations IFNA14 3448
Homo sapiens Primates Interferon INTERFERON famplex_relations IFNA16 3449
Homo sapiens Primates Interferon INTERFERON famplex_relations IFNA17 3451
Homo sapiens Primates Interferon INTERFERON famplex_relations IFNA21 3452
Homo sapiens Primates Interferon INTERFERON famplex_relations IFNB1 3456
Homo sapiens Primates CD4 CD4 ncbigene_symbol CD4 920
Homo sapiens Primates CD247 CD247 ncbigene_symbol CD247 919
Homo sapiens Primates IRAK IRAK ncbigene_synonym IRAK1 3654
Homo sapiens Primates HLA-DQB1 HLA-DQB1 ncbigene_symbol HLA-DQB1 3119
Homo sapiens Primates HLA-DQB1 HLA-DQB1 ncbigene_synonym GNAO1 2775
Homo sapiens Primates HLA-DQB1 HLA-DQB1 ncbigene_synonym HLA-DQA1 3117
Homo sapiens Primates HLA-DQB1 HLA-DQB1 ncbigene_synonym HLA-DQB2 3120
Homo sapiens Primates DPB1 DPB1 ncbigene_synonym HLA-DPB1 3115
Homo sapiens Primates DQA1 DQA1 ncbigene_synonym HLA-DQA2 3118
Homo sapiens Primates less LES ncbigene_synonym FUT3 2525
Homo sapiens Primates (MEF) MEF ncbigene_synonym ELF4 2000
Homo sapiens Primates (MEF) MEF ncbigene_synonym MEFV 4210
Homo sapiens Primates IL12A IL12A ncbigene_symbol IL12A 3592

Chemical mentions

Word Match MeSH Name ChEBI

Disease mentions

Word Match MeSH Name DOID