Ubiquitination in TNF signaling
The role of ubiquitination in TNF signaling. TNF binding to TNFR1 triggers the formation of the TNFR complex I, which comprises TRAF2, TRADD, UBE2D, cIAP1/2, and RIPK1. Within TNFR complex I, RIPK1 undergoes ubiquitination with M1-, K11-, K48-, and K63-linked ubiquitin chains, including mixed and branched chains. This ubiquitination of RIPK1 serves to stabilize TNFR complex I and enables the transmission of downstream signaling through LUBAC-induced M1-linked ubiquitination of its constituents (HOIP, HOIL-1, and SHARPIN) and NEMO, resulting in the activation of the NF-κB (p65-p50) or MAPK signaling pathway to promote cell survival and proinflammatory gene expression. Extended TNF signaling triggers additional cytotoxic pathways: the apoptosis pathway mediated by the TNFR1 complex II, which includes RIPK1-FADD-Caspase8 and the necrosome-mediated pathway via the formation of the RIPK1–RIPK3–MLKL complex. Ubiquitinated substrates and free ester-linked branched chains catalyzed by LUBAC may play a central role in mediating inflammation and cell death signaling pathways

Publication
The emerging roles of non-canonical ubiquitination in proteostasis and beyond (2024) Yoshino Akizuki, et al. J Cell Biol. 2024 May 06;223(5). Figure: F4.Organism | Group | Word | Match | Source | NCBI Symbol | NCBI ID |
---|---|---|---|---|---|---|
Homo sapiens | Primates | TNF | TNF | ncbigene_symbol | TNF | 7124 |
Homo sapiens | Primates | TNFR1 | TNFR1 | ncbigene_synonym | TNFRSF1A | 7132 |
Homo sapiens | Primates | A20 | A20 | ncbigene_synonym | TNFAIP3 | 7128 |
Homo sapiens | Primates | A20 | A20 | ncbigene_synonym | IGKV1-27 | 28935 |
Homo sapiens | Primates | TRADD | TRADD | ncbigene_symbol | TRADD | 8717 |
Homo sapiens | Primates | TRAF2 | TRAF2 | ncbigene_symbol | TRAF2 | 7186 |
Homo sapiens | Primates | TRAF2 | TRAF2 | ncbigene_synonym | TANK | 10010 |
Homo sapiens | Primates | RIPK1 | RIPK1 | ncbigene_symbol | RIPK1 | 8737 |
Homo sapiens | Primates | CIAP1/2 | CIAP1 | ncbigene_synonym | BIRC2 | 329 |
Homo sapiens | Primates | CIAP1/2 | CIAP2 | ncbigene_synonym | BIRC3 | 330 |
Homo sapiens | Primates | OTULIN | OTULIN | ncbigene_symbol | OTULIN | 90268 |
Homo sapiens | Primates | CYLD | CYLD | ncbigene_symbol | CYLD | 1540 |
Homo sapiens | Primates | SPATA2 | SPATA2 | ncbigene_symbol | SPATA2 | 9825 |
Homo sapiens | Primates | NEMO | NEMO | ncbigene_synonym | IKBKG | 8517 |
Homo sapiens | Primates | IKK | IKK | famplex_relations | CHUK | 1147 |
Homo sapiens | Primates | IKK | IKK | famplex_relations | IKBKB | 3551 |
Homo sapiens | Primates | IKK | IKK | famplex_relations | IKBKE | 9641 |
Homo sapiens | Primates | IKK | IKK | famplex_relations | TBK1 | 29110 |
Homo sapiens | Primates | SHARPIN | SHARPIN | ncbigene_symbol | SHARPIN | 81858 |
Homo sapiens | Primates | IkBa | IKBA | ncbigene_synonym | NFKBIA | 4792 |
Homo sapiens | Primates | Ik | IK | ncbigene_symbol | IK | 3550 |
Homo sapiens | Primates | HOIP | HOIP | ncbigene_synonym | RNF31 | 55072 |
Homo sapiens | Primates | HOIL-1 | HOIL-1 | ncbigene_synonym | RBCK1 | 10616 |
Homo sapiens | Primates | TAB2 | TAB2 | ncbigene_symbol | TAB2 | 23118 |
Homo sapiens | Primates | TAB3 | TAB3 | ncbigene_symbol | TAB3 | 257397 |
Homo sapiens | Primates | p65 | P65 | ncbigene_synonym | RELA | 5970 |
Homo sapiens | Primates | p65 | P65 | ncbigene_synonym | SYT1 | 6857 |
Homo sapiens | Primates | p65 | P65 | ncbigene_synonym | GORASP1 | 64689 |
Homo sapiens | Primates | p65 | P65 | ncbigene_synonym | WNK1 | 65125 |
Homo sapiens | Primates | p50 | P50 | ncbigene_synonym | CD40 | 958 |
Homo sapiens | Primates | p50 | P50 | ncbigene_synonym | ARHGEF7 | 8874 |
Homo sapiens | Primates | p50 | P50 | ncbigene_synonym | ASCC1 | 51008 |
Homo sapiens | Primates | p50 | P50 | ncbigene_synonym | H3P40 | 115482723 |
Homo sapiens | Primates | TAK1 | TAK1 | ncbigene_synonym | MAP3K7 | 6885 |
Homo sapiens | Primates | TAK1 | TAK1 | ncbigene_synonym | NR2C2 | 7182 |
Homo sapiens | Primates | MAPK | MAPK | famplex_relations | MAPK1 | 5594 |
Homo sapiens | Primates | MAPK | MAPK | famplex_relations | MAPK3 | 5595 |
Homo sapiens | Primates | MAPK | MAPK | famplex_relations | MAPK11 | 5600 |
Homo sapiens | Primates | MAPK | MAPK | famplex_relations | MAPK12 | 6300 |
Homo sapiens | Primates | MAPK | MAPK | famplex_relations | MAPK13 | 5603 |
Homo sapiens | Primates | MAPK | MAPK | famplex_relations | MAPK14 | 1432 |
Homo sapiens | Primates | MAPK | MAPK | famplex_relations | MAPK8 | 5599 |
Homo sapiens | Primates | MAPK | MAPK | famplex_relations | MAPK9 | 5601 |
Homo sapiens | Primates | MAPK | MAPK | famplex_relations | MAPK10 | 5602 |
Homo sapiens | Primates | NFKB | NFKB | ncbigene_synonym | NFKB1 | 4790 |
Homo sapiens | Primates | NFKB | NFKB | famplex_relations | RELB | 5971 |
Homo sapiens | Primates | NFKB | NFKB | famplex_relations | REL | 5966 |
Homo sapiens | Primates | NFKB | NFKB | famplex_relations | NFKB2 | 4791 |
Homo sapiens | Primates | CFLIP | CFLIP | ncbigene_synonym | CFLAR | 8837 |
Homo sapiens | Primates | FADD | FADD | ncbigene_symbol | FADD | 8772 |
Homo sapiens | Primates | MLKL | MLKL | ncbigene_symbol | MLKL | 197259 |
Homo sapiens | Primates | RIPK3 | RIPK3 | ncbigene_symbol | RIPK3 | 11035 |
Word | Match | MeSH | Name | ChEBI |
---|---|---|---|---|
NUCLEUS | nucleus | nucleus | chebi:33252 |
Disease mentions
Word | Match | MeSH | Name | DOID |
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