Ubiquitination in TNF signaling

The role of ubiquitination in TNF signaling. TNF binding to TNFR1 triggers the formation of the TNFR complex I, which comprises TRAF2, TRADD, UBE2D, cIAP1/2, and RIPK1. Within TNFR complex I, RIPK1 undergoes ubiquitination with M1-, K11-, K48-, and K63-linked ubiquitin chains, including mixed and branched chains. This ubiquitination of RIPK1 serves to stabilize TNFR complex I and enables the transmission of downstream signaling through LUBAC-induced M1-linked ubiquitination of its constituents (HOIP, HOIL-1, and SHARPIN) and NEMO, resulting in the activation of the NF-κB (p65-p50) or MAPK signaling pathway to promote cell survival and proinflammatory gene expression. Extended TNF signaling triggers additional cytotoxic pathways: the apoptosis pathway mediated by the TNFR1 complex II, which includes RIPK1-FADD-Caspase8 and the necrosome-mediated pathway via the formation of the RIPK1–RIPK3–MLKL complex. Ubiquitinated substrates and free ester-linked branched chains catalyzed by LUBAC may play a central role in mediating inflammation and cell death signaling pathways
Ubiquitination in TNF signaling

Publication

The emerging roles of non-canonical ubiquitination in proteostasis and beyond (2024) Yoshino Akizuki, et al. J Cell Biol. 2024 May 06;223(5). Figure: F4.

Gene mentions


Organism Group Word Match Source NCBI Symbol NCBI ID
Homo sapiens Primates TNF TNF ncbigene_symbol TNF 7124
Homo sapiens Primates TNFR1 TNFR1 ncbigene_synonym TNFRSF1A 7132
Homo sapiens Primates A20 A20 ncbigene_synonym TNFAIP3 7128
Homo sapiens Primates A20 A20 ncbigene_synonym IGKV1-27 28935
Homo sapiens Primates TRADD TRADD ncbigene_symbol TRADD 8717
Homo sapiens Primates TRAF2 TRAF2 ncbigene_symbol TRAF2 7186
Homo sapiens Primates TRAF2 TRAF2 ncbigene_synonym TANK 10010
Homo sapiens Primates RIPK1 RIPK1 ncbigene_symbol RIPK1 8737
Homo sapiens Primates CIAP1/2 CIAP1 ncbigene_synonym BIRC2 329
Homo sapiens Primates CIAP1/2 CIAP2 ncbigene_synonym BIRC3 330
Homo sapiens Primates OTULIN OTULIN ncbigene_symbol OTULIN 90268
Homo sapiens Primates CYLD CYLD ncbigene_symbol CYLD 1540
Homo sapiens Primates SPATA2 SPATA2 ncbigene_symbol SPATA2 9825
Homo sapiens Primates NEMO NEMO ncbigene_synonym IKBKG 8517
Homo sapiens Primates IKK IKK famplex_relations CHUK 1147
Homo sapiens Primates IKK IKK famplex_relations IKBKB 3551
Homo sapiens Primates IKK IKK famplex_relations IKBKE 9641
Homo sapiens Primates IKK IKK famplex_relations TBK1 29110
Homo sapiens Primates SHARPIN SHARPIN ncbigene_symbol SHARPIN 81858
Homo sapiens Primates IkBa IKBA ncbigene_synonym NFKBIA 4792
Homo sapiens Primates Ik IK ncbigene_symbol IK 3550
Homo sapiens Primates HOIP HOIP ncbigene_synonym RNF31 55072
Homo sapiens Primates HOIL-1 HOIL-1 ncbigene_synonym RBCK1 10616
Homo sapiens Primates TAB2 TAB2 ncbigene_symbol TAB2 23118
Homo sapiens Primates TAB3 TAB3 ncbigene_symbol TAB3 257397
Homo sapiens Primates p65 P65 ncbigene_synonym RELA 5970
Homo sapiens Primates p65 P65 ncbigene_synonym SYT1 6857
Homo sapiens Primates p65 P65 ncbigene_synonym GORASP1 64689
Homo sapiens Primates p65 P65 ncbigene_synonym WNK1 65125
Homo sapiens Primates p50 P50 ncbigene_synonym CD40 958
Homo sapiens Primates p50 P50 ncbigene_synonym ARHGEF7 8874
Homo sapiens Primates p50 P50 ncbigene_synonym ASCC1 51008
Homo sapiens Primates p50 P50 ncbigene_synonym H3P40 115482723
Homo sapiens Primates TAK1 TAK1 ncbigene_synonym MAP3K7 6885
Homo sapiens Primates TAK1 TAK1 ncbigene_synonym NR2C2 7182
Homo sapiens Primates MAPK MAPK famplex_relations MAPK1 5594
Homo sapiens Primates MAPK MAPK famplex_relations MAPK3 5595
Homo sapiens Primates MAPK MAPK famplex_relations MAPK11 5600
Homo sapiens Primates MAPK MAPK famplex_relations MAPK12 6300
Homo sapiens Primates MAPK MAPK famplex_relations MAPK13 5603
Homo sapiens Primates MAPK MAPK famplex_relations MAPK14 1432
Homo sapiens Primates MAPK MAPK famplex_relations MAPK8 5599
Homo sapiens Primates MAPK MAPK famplex_relations MAPK9 5601
Homo sapiens Primates MAPK MAPK famplex_relations MAPK10 5602
Homo sapiens Primates NFKB NFKB ncbigene_synonym NFKB1 4790
Homo sapiens Primates NFKB NFKB famplex_relations RELB 5971
Homo sapiens Primates NFKB NFKB famplex_relations REL 5966
Homo sapiens Primates NFKB NFKB famplex_relations NFKB2 4791
Homo sapiens Primates CFLIP CFLIP ncbigene_synonym CFLAR 8837
Homo sapiens Primates FADD FADD ncbigene_symbol FADD 8772
Homo sapiens Primates MLKL MLKL ncbigene_symbol MLKL 197259
Homo sapiens Primates RIPK3 RIPK3 ncbigene_symbol RIPK3 11035

Chemical mentions

Word Match MeSH Name ChEBI
NUCLEUS nucleus nucleus chebi:33252

Disease mentions

Word Match MeSH Name DOID