Tumor necrosis factorA pathway for necroptosis

Tumor necrosis factor-α pathway for necroptosis. Combination of tumor necrosis factor (TNF)-α and TNF-R1 can raise TNF-α receptor associated death domain protein (TRADD), receptor interacting protein kinase 1 (RIPK1), TNFR-associated factor 2, cellular inhibitors of apoptosis (cIAP1 or cIAP2) and linear ubiquitin chain assembly complex to form Complex I, which can activate the Mitogen-activated protein kinase and NF-κB pathways by binding the TGF–TAK1–TAB and IKK1–IKK2–NEMO complexes, leading to cell survival. Complex IIa [consists of TRADD, Fas-associated death domain (FADD) and caspase-8] forms when Complex I is unstable and mediates apoptosis independent of RIPK1. Complex IIb (consists of RIPK1, RIPK3, FADD and caspase-8) forms when cIAP inhibitors are present or IAPs are knocked out, TAK1 inhibitors are present or TAK1 is knocked out, and NEMO is knocked out, and mediates apoptosis dependent on the binding of RIPK1 and RIPK3. Complex IIc (consists of RIPK1, RIPK3 and MLKL) forms when caspase-8 is inhibited or missing and leads to necroptosis. TRAF2: TNFR-associated factor 2; cIAP1 or cIAP2: Cellular inhibitors of apoptosis; LUBAC: Linear ubiquitin chain assembly complex; TRADD: TNF-α receptor associated death domain protein; MAPK: Mitogen-activated protein kinase; FADD: Fas-associated death domain.
Tumor necrosis factorA pathway for necroptosis

Publication

Necroptosis in inflammatory bowel disease and other intestinal diseases. (2018) Sha Li, et al. World J Clin Cases. 2018 Nov 26;6(14):745-752. Figure: F1.

Gene mentions


Organism Group Word Match Source NCBI Symbol NCBI ID
Mus musculus Rodents TNF TNF ncbigene_symbol Tnf 21926
Mus musculus Rodents TRADD TRADD ncbigene_symbol Tradd 71609
Mus musculus Rodents TNFR1 TNFR1 ncbigene_synonym Tnfrsf1a 21937
Mus musculus Rodents TNFR1 TNFR1 ncbigene_synonym Tnfrsf1b 21938
Mus musculus Rodents IIc IIC ncbigene_synonym Myh14 71960
Mus musculus Rodents TRAF2 TRAF2 ncbigene_symbol Traf2 22030
Mus musculus Rodents RIPK1 RIPK1 ncbigene_symbol Ripk1 19766
Mus musculus Rodents CIAP1 CIAP1 ncbigene_synonym Birc3 11796
Mus musculus Rodents CIAP1 CIAP1 ncbigene_synonym Birc2 11797
Mus musculus Rodents FADD FADD ncbigene_symbol Fadd 14082
Mus musculus Rodents RIPK3 RIPK3 ncbigene_symbol Ripk3 56532
Mus musculus Rodents MLKL MLKL ncbigene_symbol Mlkl 74568
Mus musculus Rodents TAK1 TAK1 ncbigene_synonym Nr2c2 22026
Mus musculus Rodents TAK1 TAK1 ncbigene_synonym Map3k7 26409
Mus musculus Rodents NEMO NEMO ncbigene_synonym Ikbkg 16151
Mus musculus Rodents IKK1 IKK1 ncbigene_synonym Chuk 12675
Mus musculus Rodents IKK2 IKK2 ncbigene_synonym Ikbkb 16150
Mus musculus Rodents МАРК APK ncbigene_symbol Apk 109950
Mus musculus Rodents NF-KB NF-KB ncbigene_synonym Nfkb1 18033
Homo sapiens Primates TNF TNF ncbigene_symbol TNF 7124
Homo sapiens Primates TRADD TRADD ncbigene_symbol TRADD 8717
Homo sapiens Primates TNFR1 TNFR1 ncbigene_synonym TNFRSF1A 7132
Homo sapiens Primates TRAF2 TRAF2 ncbigene_symbol TRAF2 7186
Homo sapiens Primates TRAF2 TRAF2 ncbigene_synonym TANK 10010
Homo sapiens Primates RIPK1 RIPK1 ncbigene_symbol RIPK1 8737
Homo sapiens Primates CIAP1 CIAP1 ncbigene_synonym BIRC2 329
Homo sapiens Primates CIAP1/2 CIAP2 ncbigene_synonym BIRC3 330
Homo sapiens Primates FADD FADD ncbigene_symbol FADD 8772
Homo sapiens Primates RIPK3 RIPK3 ncbigene_symbol RIPK3 11035
Homo sapiens Primates Caspases CASPASE famplex_relations CASP1 834
Homo sapiens Primates Caspases CASPASE famplex_relations CASP2 835
Homo sapiens Primates Caspases CASPASE famplex_relations CASP4 837
Homo sapiens Primates Caspases CASPASE famplex_relations CASP5 838
Homo sapiens Primates Caspases CASPASE famplex_relations CASP6 839
Homo sapiens Primates Caspases CASPASE famplex_relations CASP8 841
Homo sapiens Primates Caspases CASPASE famplex_relations CASP9 842
Homo sapiens Primates Caspases CASPASE famplex_relations CASP10 843
Homo sapiens Primates Caspases CASPASE famplex_relations CASP12 100506742
Homo sapiens Primates Caspases CASPASE famplex_relations CASP14 23581
Homo sapiens Primates Caspases CASPASE famplex_relations CASP3 836
Homo sapiens Primates Caspases CASPASE famplex_relations CASP7 840
Homo sapiens Primates MLKL MLKL ncbigene_symbol MLKL 197259
Homo sapiens Primates TAK1 TAK1 ncbigene_synonym MAP3K7 6885
Homo sapiens Primates TAK1 TAK1 ncbigene_synonym NR2C2 7182
Homo sapiens Primates NEMO NEMO ncbigene_synonym IKBKG 8517
Homo sapiens Primates IKK1 IKK1 ncbigene_synonym CHUK 1147
Homo sapiens Primates TAB TAB famplex_relations TAB1 10454
Homo sapiens Primates TAB TAB famplex_relations TAB2 23118
Homo sapiens Primates TAB TAB famplex_relations TAB3 257397
Homo sapiens Primates IKK2 IKK2 ncbigene_synonym IKBKB 3551
Homo sapiens Primates NF-KB NF-KB ncbigene_synonym NFKB1 4790
Homo sapiens Primates MAPK MAPK famplex_relations MAPK1 5594
Homo sapiens Primates MAPK MAPK famplex_relations MAPK3 5595
Homo sapiens Primates MAPK MAPK famplex_relations MAPK11 5600
Homo sapiens Primates MAPK MAPK famplex_relations MAPK12 6300
Homo sapiens Primates MAPK MAPK famplex_relations MAPK13 5603
Homo sapiens Primates MAPK MAPK famplex_relations MAPK14 1432
Homo sapiens Primates MAPK MAPK famplex_relations MAPK8 5599
Homo sapiens Primates MAPK MAPK famplex_relations MAPK9 5601
Homo sapiens Primates MAPK MAPK famplex_relations MAPK10 5602
Rattus norvegicus Rodents TNF TNF ncbigene_symbol Tnf 24835
Rattus norvegicus Rodents TRADD TRADD ncbigene_symbol Tradd 246756
Rattus norvegicus Rodents TNFR1 TNFR1 ncbigene_synonym Tnfrsf1a 25625
Rattus norvegicus Rodents TRAF2 TRAF2 ncbigene_symbol Traf2 311786
Rattus norvegicus Rodents RIPK1 RIPK1 ncbigene_symbol Ripk1 306886
Rattus norvegicus Rodents RIPK1 RIPK1 ncbigene_synonym Ippk 306808
Rattus norvegicus Rodents FADD FADD ncbigene_symbol Fadd 266610
Rattus norvegicus Rodents RIPK3 RIPK3 ncbigene_symbol Ripk3 246240
Rattus norvegicus Rodents MLKL MLKL ncbigene_symbol Mlkl 690743
Rattus norvegicus Rodents TAK1 TAK1 ncbigene_synonym Map3k7 313121
Rattus norvegicus Rodents NEMO NEMO ncbigene_synonym Ikbkg 309295
Rattus norvegicus Rodents IKK2 IKK2 ncbigene_synonym Ikbkb 84351
Rattus norvegicus Rodents NF-KB NF-KB ncbigene_synonym Nfkb1 81736
Danio rerio Vertebrates TNF TNF ncbigene_synonym tnfrsfa 114461
Danio rerio Vertebrates TNF TNF ncbigene_synonym tnfb 554167
Danio rerio Vertebrates TRADD TRADD ncbigene_symbol tradd 58130
Danio rerio Vertebrates FADD FADD ncbigene_symbol fadd 562317
Danio rerio Vertebrates RIPK3 RIPK3 ncbigene_symbol ripk3 100004555
Danio rerio Vertebrates NEMO NEMO ncbigene_synonym ikbkg 541530
Danio rerio Vertebrates IKK1 IKK1 ncbigene_synonym chuk 393287
Danio rerio Vertebrates Caspase8 CASPASE8 ncbigene_synonym casp8 58022
Danio rerio Vertebrates IKK2 IKK2 ncbigene_synonym ikbkb 563560

Chemical mentions

Word Match MeSH Name ChEBI

Disease mentions

Word Match MeSH Name DOID