Biosynthesis of Isoprenoid building blocks

Biosynthesis of Isoprenoid building blocks. The three pathways leading to the synthesis of IPP and DMAPP – MEP/DOXP pathway, Mevalonate and the alternate mevalonate pathway (in red), which is prevalent in archaea are shown. Mevalonate and the alternate mevalonate pathways share four of their seven enzymatic steps. The enzyme acronyms are written in bold. DXS, 1-Deoxy-d-xylulose 5-phosphate synthase; DXR, 1-Deoxy-d-xylulose 5-phosphate reductase; CMS, 2-C-methyl-d-erythriol 4-phosphate cytidyltransferase; CMK, 4-diphosphocytidyl-2-C-methyl-d-erythritol kinase; MCS, 2-C-methyl-d-erythritol 2,4-cyclodiphosphate synthase; HDS, (E)-4-Hydroxy-3-methyl-but-2-enyl pyrophosphate synthase; HDR, (E)-4-Hydroxy-3-methyl-but-2-enyl pyrophosphate reductase; IDI, Isopentenyl diphosphate isomerase; AACT, acetoacetyl-CoA thiolase; HMGS, 3-hydroxy-3-methylglutaryl-CoA synthase; HMGR, 3-hydroxy-3-methylglutaryl-CoA reductase; MVK, mevalonate kinase; PMK, phosphomevalonate kinase; MDC, mevalonate-5-decarboxylase; IPK, isopentenyl phosphate kinase.
Biosynthesis of Isoprenoid building blocks

Publication

Biosynthesis of archaeal membrane ether lipids. (2014) Samta Jain, et al. Front Microbiol. 2014;5:641. Figure: F1.

Gene mentions


Organism Group Word Match Source NCBI Symbol NCBI ID
Homo sapiens Primates MEP/DOXPpathway MEP ncbigene_synonym CTSL 1514
Homo sapiens Primates MEP/DOXPpathway MEP ncbigene_synonym NLN 57486
Homo sapiens Primates AACT AACT ncbigene_synonym SERPINA3 12
Homo sapiens Primates HMGR HMGR ncbigene_synonym HMGA1 3159
Homo sapiens Primates CMS CMS ncbigene_synonym CD2AP 23607
Homo sapiens Primates MVK MVK ncbigene_symbol MVK 4598
Homo sapiens Primates CMK CMK ncbigene_synonym CXCL9 4283
Homo sapiens Primates CMK CMK ncbigene_synonym CMPK1 51727
Homo sapiens Primates PMK PMK ncbigene_synonym PMVK 10654
Homo sapiens Primates MCS MCS ncbigene_synonym SMCP 4184
Homo sapiens Primates MCS MCS ncbigene_synonym MOCOS 55034
Homo sapiens Primates MCS MCS ncbigene_synonym ZC4H2 55906
Homo sapiens Primates MDC MDC ncbigene_synonym ADAM11 4185
Homo sapiens Primates MDC MDC ncbigene_synonym CCL22 6367
Homo sapiens Primates IDI2 IDI2 ncbigene_symbol IDI2 91734
Homo sapiens Primates IDI1 IDI1 ncbigene_symbol IDI1 3422
Homo sapiens Primates HDR HDR ncbigene_synonym GATA3 2625
Drosophila melanogaster Invertebrates COA COA ncbigene_symbol Coa 248135
Drosophila melanogaster Invertebrates HMGS HMGS ncbigene_symbol Hmgs 44154
Drosophila melanogaster Invertebrates HMGR HMGR ncbigene_synonym Hmgcr 42803
Drosophila melanogaster Invertebrates MVK MVK ncbigene_symbol Mvk 3772247
Drosophila melanogaster Invertebrates IDI IDI ncbigene_symbol Idi 42526
Escherichia coli str. K-12 substr. MG1655 Bacteria DXS DXS ncbigene_symbol dxs 945060
Escherichia coli str. K-12 substr. MG1655 Bacteria DXR DXR ncbigene_symbol dxr 945019
Escherichia coli str. K-12 substr. MG1655 Bacteria CMK CMK ncbigene_symbol cmk 945535
Escherichia coli str. K-12 substr. MG1655 Bacteria IPK IPK ncbigene_synonym ispE 945774
Escherichia coli str. K-12 substr. MG1655 Bacteria IDI IDI ncbigene_symbol idi 949020

Chemical mentions

Word Match MeSH Name ChEBI
Hydroxymethyl-glutaryl-CoA glutaryl-CoA mesh:C015901 glutaryl-coenzyme A chebi:15524
Mevalonate-5-phosphate NA mesh:C045038
Mevalonate-5-diphosphate NA mesh:C046285
2-C-Methyl-D-erythritol-4-phosphate NA mesh:C114232
2-C-methyl-D-erythritol-2,4-cyclodiphosphate NA mesh:C443879
Cytidine Cytidine mesh:D003562 cytidine chebi:17562
P-Cytidine Cytidine mesh:D003562 cytidine chebi:17562
Glyceraldehyde-3-phosphate Glyceraldehyde 3-Phosphate mesh:D005986 glyceraldehyde 3-phosphate chebi:17138
Mevalonate NA mesh:D008798
Isopentenenyl phosphate NA mesh:D010710
Isopentenenyl diphosphate NA mesh:D011756
diphosphate NA mesh:D011756
Pyruvate NA mesh:D011773

Disease mentions

Word Match MeSH Name DOID