Biosynthesis of Isoprenoid building blocks
Biosynthesis of Isoprenoid building blocks. The three pathways leading to the synthesis of IPP and DMAPP – MEP/DOXP pathway, Mevalonate and the alternate mevalonate pathway (in red), which is prevalent in archaea are shown. Mevalonate and the alternate mevalonate pathways share four of their seven enzymatic steps. The enzyme acronyms are written in bold. DXS, 1-Deoxy-d-xylulose 5-phosphate synthase; DXR, 1-Deoxy-d-xylulose 5-phosphate reductase; CMS, 2-C-methyl-d-erythriol 4-phosphate cytidyltransferase; CMK, 4-diphosphocytidyl-2-C-methyl-d-erythritol kinase; MCS, 2-C-methyl-d-erythritol 2,4-cyclodiphosphate synthase; HDS, (E)-4-Hydroxy-3-methyl-but-2-enyl pyrophosphate synthase; HDR, (E)-4-Hydroxy-3-methyl-but-2-enyl pyrophosphate reductase; IDI, Isopentenyl diphosphate isomerase; AACT, acetoacetyl-CoA thiolase; HMGS, 3-hydroxy-3-methylglutaryl-CoA synthase; HMGR, 3-hydroxy-3-methylglutaryl-CoA reductase; MVK, mevalonate kinase; PMK, phosphomevalonate kinase; MDC, mevalonate-5-decarboxylase; IPK, isopentenyl phosphate kinase.
Publication
Biosynthesis of archaeal membrane ether lipids. (2014) Samta Jain, et al. Front Microbiol. 2014;5:641. Figure: F1.| Organism | Group | Word | Match | Source | NCBI Symbol | NCBI ID |
|---|---|---|---|---|---|---|
| Homo sapiens | Primates | MEP/DOXPpathway | MEP | ncbigene_synonym | CTSL | 1514 |
| Homo sapiens | Primates | MEP/DOXPpathway | MEP | ncbigene_synonym | NLN | 57486 |
| Homo sapiens | Primates | AACT | AACT | ncbigene_synonym | SERPINA3 | 12 |
| Homo sapiens | Primates | HMGR | HMGR | ncbigene_synonym | HMGA1 | 3159 |
| Homo sapiens | Primates | CMS | CMS | ncbigene_synonym | CD2AP | 23607 |
| Homo sapiens | Primates | MVK | MVK | ncbigene_symbol | MVK | 4598 |
| Homo sapiens | Primates | CMK | CMK | ncbigene_synonym | CXCL9 | 4283 |
| Homo sapiens | Primates | CMK | CMK | ncbigene_synonym | CMPK1 | 51727 |
| Homo sapiens | Primates | PMK | PMK | ncbigene_synonym | PMVK | 10654 |
| Homo sapiens | Primates | MCS | MCS | ncbigene_synonym | SMCP | 4184 |
| Homo sapiens | Primates | MCS | MCS | ncbigene_synonym | MOCOS | 55034 |
| Homo sapiens | Primates | MCS | MCS | ncbigene_synonym | ZC4H2 | 55906 |
| Homo sapiens | Primates | MDC | MDC | ncbigene_synonym | ADAM11 | 4185 |
| Homo sapiens | Primates | MDC | MDC | ncbigene_synonym | CCL22 | 6367 |
| Homo sapiens | Primates | IDI2 | IDI2 | ncbigene_symbol | IDI2 | 91734 |
| Homo sapiens | Primates | IDI1 | IDI1 | ncbigene_symbol | IDI1 | 3422 |
| Homo sapiens | Primates | HDR | HDR | ncbigene_synonym | GATA3 | 2625 |
| Drosophila melanogaster | Invertebrates | COA | COA | ncbigene_symbol | Coa | 248135 |
| Drosophila melanogaster | Invertebrates | HMGS | HMGS | ncbigene_symbol | Hmgs | 44154 |
| Drosophila melanogaster | Invertebrates | HMGR | HMGR | ncbigene_synonym | Hmgcr | 42803 |
| Drosophila melanogaster | Invertebrates | MVK | MVK | ncbigene_symbol | Mvk | 3772247 |
| Drosophila melanogaster | Invertebrates | IDI | IDI | ncbigene_symbol | Idi | 42526 |
| Escherichia coli str. K-12 substr. MG1655 | Bacteria | DXS | DXS | ncbigene_symbol | dxs | 945060 |
| Escherichia coli str. K-12 substr. MG1655 | Bacteria | DXR | DXR | ncbigene_symbol | dxr | 945019 |
| Escherichia coli str. K-12 substr. MG1655 | Bacteria | CMK | CMK | ncbigene_symbol | cmk | 945535 |
| Escherichia coli str. K-12 substr. MG1655 | Bacteria | IPK | IPK | ncbigene_synonym | ispE | 945774 |
| Escherichia coli str. K-12 substr. MG1655 | Bacteria | IDI | IDI | ncbigene_symbol | idi | 949020 |
| Word | Match | MeSH | Name | ChEBI |
|---|---|---|---|---|
| Hydroxymethyl-glutaryl-CoA | glutaryl-CoA | mesh:C015901 | glutaryl-coenzyme A | chebi:15524 |
| Mevalonate-5-phosphate | NA | mesh:C045038 | ||
| Mevalonate-5-diphosphate | NA | mesh:C046285 | ||
| 2-C-Methyl-D-erythritol-4-phosphate | NA | mesh:C114232 | ||
| 2-C-methyl-D-erythritol-2,4-cyclodiphosphate | NA | mesh:C443879 | ||
| Cytidine | Cytidine | mesh:D003562 | cytidine | chebi:17562 |
| P-Cytidine | Cytidine | mesh:D003562 | cytidine | chebi:17562 |
| Glyceraldehyde-3-phosphate | Glyceraldehyde 3-Phosphate | mesh:D005986 | glyceraldehyde 3-phosphate | chebi:17138 |
| Mevalonate | NA | mesh:D008798 | ||
| Isopentenenyl phosphate | NA | mesh:D010710 | ||
| Isopentenenyl diphosphate | NA | mesh:D011756 | ||
| diphosphate | NA | mesh:D011756 | ||
| Pyruvate | NA | mesh:D011773 |
Disease mentions
| Word | Match | MeSH | Name | DOID |
|---|