Schematic representation of xylose metabolic pathway in metabolically engineered S
Schematic representation of xylose metabolic pathway in metabolically engineered S. cerevisiae strains. Abbreviations: BPGA, 1,3-bisphosphoglycerate; DHAP, dihydroxyacetonephosphate; E4P, erythrose-4-phosphate; FBP, fructose-1,6-bisphosphate; F6P, fructose-6-phosphate; GAP, glyceraldehyde-3-phosphate; Glycerol3P, glycerol-3-phosphate; G6P, glucose-6-phosphate; PEP, phosphoenolpyruvate; 6PG, 6-phosphogluconate; 2PGA, 2-phosphoglycerate; 3PGA, 3-phosphoglycerate; R5P, ribose-5-phosphate; Ru5P, ribulose-5-phosphate; S7P, sedoheptulose-7-phosphate; X5P, xylulose-5-phosphate. Enzymes are indicated by their gene assignment symbols: GND, 6-phosphogluconate dehydrogenase; SOL, 6-phosphogluconolactonase; TAL, transaldolase; TDH, glyceraldehydes-3-phosphate dehydrogenase; TKL, transketolase; RPE, ribulose-5-phosphate 4-epimerase; RKI, ribose-5-phosphate isomerase; XI, xylose isomerase; XK, xylulokinase; XDH, xylitol dehydrogenase; XR, xylose reductase; ZWF, glucose-6-phosphate dehydrogenase.

Publication
Metabolic pathway engineering based on metabolomics confers acetic and formic acid tolerance to a recombinant xylose-fermenting strain of Saccharomyces cerevisiae. (2011) Tomohisa Hasunuma, et al. Microb Cell Fact. 2011;10:2-2. Figure: F1.Organism | Group | Word | Match | Source | NCBI Symbol | NCBI ID |
---|---|---|---|---|---|---|
Homo sapiens | Primates | RPE | RPE | ncbigene_symbol | RPE | 6120 |
Homo sapiens | Primates | XDH | XDH | ncbigene_symbol | XDH | 7498 |
Homo sapiens | Primates | XDH | XDH | ncbigene_synonym | SORD | 6652 |
Homo sapiens | Primates | GAP | GAP | ncbigene_synonym | RASA1 | 5921 |
Homo sapiens | Primates | GAP | GAP | ncbigene_synonym | RGS6 | 9628 |
Homo sapiens | Primates | XK | XK | ncbigene_symbol | XK | 7504 |
Homo sapiens | Primates | TKL | TKL | ncbigene_synonym | TXK | 7294 |
Homo sapiens | Primates | TAL | TAL | ncbigene_synonym | TALDO1 | 6888 |
Homo sapiens | Primates | TAL | TAL | ncbigene_synonym | LRSAM1 | 90678 |
Homo sapiens | Primates | FBP | FBP | ncbigene_synonym | FBP1 | 2203 |
Homo sapiens | Primates | FBP | FBP | ncbigene_synonym | FOLR1 | 2348 |
Homo sapiens | Primates | FBP | FBP | ncbigene_synonym | FOLR2 | 2350 |
Homo sapiens | Primates | FBP | FBP | ncbigene_synonym | ECB2 | 8056 |
Homo sapiens | Primates | FBP | FBP | ncbigene_synonym | FUBP1 | 8880 |
Homo sapiens | Primates | FBP | FBP | ncbigene_synonym | RAB14 | 51552 |
Homo sapiens | Primates | PEP | PEP | ncbigene_synonym | PAEP | 5047 |
Homo sapiens | Primates | PEP | PEP | ncbigene_synonym | PREP | 5550 |
Homo sapiens | Primates | PEP | PEP | ncbigene_synonym | PTPN22 | 26191 |
Drosophila melanogaster | Invertebrates | GND | GND | ncbigene_symbol | gnd | 5656923 |
Drosophila melanogaster | Invertebrates | RPE | RPE | ncbigene_symbol | Rpe | 35692 |
Drosophila melanogaster | Invertebrates | SOL | SOL | ncbigene_symbol | sol | 44014 |
Drosophila melanogaster | Invertebrates | G6P | G6P | ncbigene_symbol | G6P | 33476 |
Drosophila melanogaster | Invertebrates | XDH | XDH | ncbigene_synonym | ry | 41605 |
Drosophila melanogaster | Invertebrates | GAP | GAP | ncbigene_synonym | Gapdh2 | 32545 |
Drosophila melanogaster | Invertebrates | GAP | GAP | ncbigene_synonym | CdGAPr | 35267 |
Drosophila melanogaster | Invertebrates | GAP | GAP | ncbigene_synonym | Gapdh1 | 35728 |
Drosophila melanogaster | Invertebrates | GAP | GAP | ncbigene_synonym | RasGAP1 | 39158 |
Drosophila melanogaster | Invertebrates | GAP | GAP | ncbigene_synonym | ArfGAP1 | 39417 |
Drosophila melanogaster | Invertebrates | TAL | TAL | ncbigene_synonym | Taldo | 37804 |
Drosophila melanogaster | Invertebrates | TAL | TAL | ncbigene_synonym | tal-2A | 7354376 |
Drosophila melanogaster | Invertebrates | TAL | TAL | ncbigene_synonym | tal-AA | 7354377 |
Drosophila melanogaster | Invertebrates | TAL | TAL | ncbigene_synonym | tal-3A | 7354378 |
Drosophila melanogaster | Invertebrates | TAL | TAL | ncbigene_synonym | tal-1A | 7354381 |
Drosophila melanogaster | Invertebrates | FBP | FBP | ncbigene_symbol | fbp | 35265 |
Drosophila melanogaster | Invertebrates | DHAP- | DHAP | ncbigene_synonym | Aldh-III | 45398 |
Drosophila melanogaster | Invertebrates | -GẠP+ | GP | ncbigene_symbol | gp | 251209 |
Drosophila melanogaster | Invertebrates | PEP | PEP | ncbigene_symbol | Pep | 45961 |
Drosophila melanogaster | Invertebrates | PEP | PEP | ncbigene_synonym | bgcn | 47873 |
Word | Match | MeSH | Name | ChEBI |
---|---|---|---|---|
Acetaldehyde | Acetaldehyde | mesh:D000079 | acetaldehyde | chebi:15343 |
Acetate | Acetates | mesh:D000085 | acetate ester | chebi:47622 |
Ethanol | Ethanol | mesh:D000431 | ethanol | chebi:16236 |
Glucose | Glucose | mesh:D005947 | D-glucopyranose | chebi:4167 |
Glycerol | Glycerol | mesh:D005990 | glycerol | chebi:17754 |
Glycerol3P | Glycerol | mesh:D005990 | glycerol | chebi:17754 |
Pyruvate | NA | mesh:D011773 | ||
Xylitol | Xylitol | mesh:D014993 | xylitol | chebi:17151 |
Disease mentions
Word | Match | MeSH | Name | DOID |
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