Schematic representation of xylose metabolic pathway in metabolically engineered S

Schematic representation of xylose metabolic pathway in metabolically engineered S. cerevisiae strains. Abbreviations: BPGA, 1,3-bisphosphoglycerate; DHAP, dihydroxyacetonephosphate; E4P, erythrose-4-phosphate; FBP, fructose-1,6-bisphosphate; F6P, fructose-6-phosphate; GAP, glyceraldehyde-3-phosphate; Glycerol3P, glycerol-3-phosphate; G6P, glucose-6-phosphate; PEP, phosphoenolpyruvate; 6PG, 6-phosphogluconate; 2PGA, 2-phosphoglycerate; 3PGA, 3-phosphoglycerate; R5P, ribose-5-phosphate; Ru5P, ribulose-5-phosphate; S7P, sedoheptulose-7-phosphate; X5P, xylulose-5-phosphate. Enzymes are indicated by their gene assignment symbols: GND, 6-phosphogluconate dehydrogenase; SOL, 6-phosphogluconolactonase; TAL, transaldolase; TDH, glyceraldehydes-3-phosphate dehydrogenase; TKL, transketolase; RPE, ribulose-5-phosphate 4-epimerase; RKI, ribose-5-phosphate isomerase; XI, xylose isomerase; XK, xylulokinase; XDH, xylitol dehydrogenase; XR, xylose reductase; ZWF, glucose-6-phosphate dehydrogenase.
Schematic representation of xylose metabolic pathway in metabolically engineered S

Publication

Metabolic pathway engineering based on metabolomics confers acetic and formic acid tolerance to a recombinant xylose-fermenting strain of Saccharomyces cerevisiae. (2011) Tomohisa Hasunuma, et al. Microb Cell Fact. 2011;10:2-2. Figure: F1.

Gene mentions


Organism Group Word Match Source NCBI Symbol NCBI ID
Homo sapiens Primates RPE RPE ncbigene_symbol RPE 6120
Homo sapiens Primates XDH XDH ncbigene_symbol XDH 7498
Homo sapiens Primates XDH XDH ncbigene_synonym SORD 6652
Homo sapiens Primates GAP GAP ncbigene_synonym RASA1 5921
Homo sapiens Primates GAP GAP ncbigene_synonym RGS6 9628
Homo sapiens Primates XK XK ncbigene_symbol XK 7504
Homo sapiens Primates TKL TKL ncbigene_synonym TXK 7294
Homo sapiens Primates TAL TAL ncbigene_synonym TALDO1 6888
Homo sapiens Primates TAL TAL ncbigene_synonym LRSAM1 90678
Homo sapiens Primates FBP FBP ncbigene_synonym FBP1 2203
Homo sapiens Primates FBP FBP ncbigene_synonym FOLR1 2348
Homo sapiens Primates FBP FBP ncbigene_synonym FOLR2 2350
Homo sapiens Primates FBP FBP ncbigene_synonym ECB2 8056
Homo sapiens Primates FBP FBP ncbigene_synonym FUBP1 8880
Homo sapiens Primates FBP FBP ncbigene_synonym RAB14 51552
Homo sapiens Primates PEP PEP ncbigene_synonym PAEP 5047
Homo sapiens Primates PEP PEP ncbigene_synonym PREP 5550
Homo sapiens Primates PEP PEP ncbigene_synonym PTPN22 26191
Drosophila melanogaster Invertebrates GND GND ncbigene_symbol gnd 5656923
Drosophila melanogaster Invertebrates RPE RPE ncbigene_symbol Rpe 35692
Drosophila melanogaster Invertebrates SOL SOL ncbigene_symbol sol 44014
Drosophila melanogaster Invertebrates G6P G6P ncbigene_symbol G6P 33476
Drosophila melanogaster Invertebrates XDH XDH ncbigene_synonym ry 41605
Drosophila melanogaster Invertebrates GAP GAP ncbigene_synonym Gapdh2 32545
Drosophila melanogaster Invertebrates GAP GAP ncbigene_synonym CdGAPr 35267
Drosophila melanogaster Invertebrates GAP GAP ncbigene_synonym Gapdh1 35728
Drosophila melanogaster Invertebrates GAP GAP ncbigene_synonym RasGAP1 39158
Drosophila melanogaster Invertebrates GAP GAP ncbigene_synonym ArfGAP1 39417
Drosophila melanogaster Invertebrates TAL TAL ncbigene_synonym Taldo 37804
Drosophila melanogaster Invertebrates TAL TAL ncbigene_synonym tal-2A 7354376
Drosophila melanogaster Invertebrates TAL TAL ncbigene_synonym tal-AA 7354377
Drosophila melanogaster Invertebrates TAL TAL ncbigene_synonym tal-3A 7354378
Drosophila melanogaster Invertebrates TAL TAL ncbigene_synonym tal-1A 7354381
Drosophila melanogaster Invertebrates FBP FBP ncbigene_symbol fbp 35265
Drosophila melanogaster Invertebrates DHAP- DHAP ncbigene_synonym Aldh-III 45398
Drosophila melanogaster Invertebrates -GẠP+ GP ncbigene_symbol gp 251209
Drosophila melanogaster Invertebrates PEP PEP ncbigene_symbol Pep 45961
Drosophila melanogaster Invertebrates PEP PEP ncbigene_synonym bgcn 47873

Chemical mentions

Word Match MeSH Name ChEBI
Acetaldehyde Acetaldehyde mesh:D000079 acetaldehyde chebi:15343
Acetate Acetates mesh:D000085 acetate ester chebi:47622
Ethanol Ethanol mesh:D000431 ethanol chebi:16236
Glucose Glucose mesh:D005947 D-glucopyranose chebi:4167
Glycerol Glycerol mesh:D005990 glycerol chebi:17754
Glycerol3P Glycerol mesh:D005990 glycerol chebi:17754
Pyruvate NA mesh:D011773
Xylitol Xylitol mesh:D014993 xylitol chebi:17151

Disease mentions

Word Match MeSH Name DOID