KLA increases mRNA expression of genes involved in sphingolipid biosynthesis

KLA increases mRNA expression of genes involved in sphingolipid biosynthesis. Gene expression data for the sphingolipid metabolic enzymes following 24 h of treatment with KLA (100 ng/ml) using the KEGG-based microarray analysis tool (GenMAPP version 2.1) that has been modified to display this pathway more completely. The coloration is log2-fold change in expression following treatment with KLA (100 ng/ml) for 24 h from microarray data generated by the LIPID MAPS Consortium. The sphingolipid metabolites and genes (with the gene abbreviations shown in boxes or enzyme names where gene names are ambiguous) are given for the condensation of serine and palmitoyl-CoA to form 3-ketosphinganine (3-ketoSa) by serine palmitoyltransferase (SPT), which is reduced to sphinganine (Sa), acylated to dihydroceramides (DHCer) by (DH)Cer synthases (CerS), and incorporated into more complex DH-sphingolipids (the 1-phosphate (DHCer-1-P) sphingomyelins (DHSM), glucosylceramides (DHGlcCer), galactosylceramides (DHGalCer)) or desaturated to Cer followed by headgroup addition. Also included are a number of the catabolic genes, e.g. sphingomyelinases (SMPD), ceramidases (ASAH), sphingosine kinases (SphK) for the formation of sphinganine 1-phosphate (Sa1P) and sphingosine 1-phosphate (So1P), and phosphatases for the reverse reaction and the lyase that cleaves sphingoid base 1-phosphates to ethanolamine phosphate (EP), hexadecanal (C16:0al), and hexadecenal (C16:1al).
KLA increases mRNA expression of genes involved in sphingolipid biosynthesis

Publication

Kdo2-Lipid A, a TLR4-specific Agonist, Induces de Novo Sphingolipid Biosynthesis in RAW264.7 Macrophages, Which Is Essential for Induction of Autophagy. (2010) Kacee Sims, et al. J Biol Chem. 2010 Dec 3;285(49):38568-38579. Figure: F5.

Gene mentions


Organism Group Word Match Source NCBI Symbol NCBI ID
Homo sapiens Primates SalP- SALP ncbigene_synonym KHDRBS3 10656
Homo sapiens Primates SPTI SPTI ncbigene_synonym SPTLC1 10558
Homo sapiens Primates PPAP2A PPAP2A ncbigene_synonym PLPP1 8611
Homo sapiens Primates SPT2 SPT2 ncbigene_synonym SPTLC2 9517
Homo sapiens Primates SPT2 SPT2 ncbigene_synonym SPTY2D1 144108
Homo sapiens Primates SPHK2 SPHK2 ncbigene_symbol SPHK2 56848
Homo sapiens Primates SPT3 SPT3 ncbigene_synonym SUPT3H 8464
Homo sapiens Primates SPT3 SPT3 ncbigene_synonym SPTLC3 55304
Homo sapiens Primates ASAH3 ASAH3 ncbigene_synonym ACER1 125981
Homo sapiens Primates ASAH2 ASAH2 ncbigene_symbol ASAH2 56624
Homo sapiens Primates CerS4 CERS4 ncbigene_symbol CERS4 79603
Homo sapiens Primates CerS2 CERS2 ncbigene_symbol CERS2 29956
Homo sapiens Primates Cers1 CERS1 ncbigene_symbol CERS1 10715
Homo sapiens Primates Cers1 CERS1 ncbigene_synonym GDF1 2657
Homo sapiens Primates Cers3 CERS3 ncbigene_symbol CERS3 204219
Homo sapiens Primates Cers6 CERS6 ncbigene_symbol CERS6 253782
Homo sapiens Primates DESI DESI ncbigene_synonym DESI2 51029
Homo sapiens Primates DESI DESI famplex_relations DESI1 27351
Homo sapiens Primates DES2 DES2 ncbigene_synonym DEGS2 123099
Homo sapiens Primates CERT CERT ncbigene_synonym CERT1 10087
Homo sapiens Primates CERK CERK ncbigene_symbol CERK 64781
Homo sapiens Primates SMS2 SMS2 ncbigene_synonym SGMS2 166929
Homo sapiens Primates SMPD2 SMPD2 ncbigene_symbol SMPD2 6610
Mus musculus Rodents Fold FOLD ncbigene_synonym Ass1 11898
Mus musculus Rodents SalP- SALP ncbigene_synonym Khdrbs3 13992
Mus musculus Rodents PPAP2A PPAP2A ncbigene_synonym Plpp1 19012
Mus musculus Rodents SPT2 SPT2 ncbigene_synonym Mucl1 20771
Mus musculus Rodents SPT2 SPT2 ncbigene_synonym Sptlc2 20773
Mus musculus Rodents SPT2 SPT2 ncbigene_synonym Dcpp2 630537
Mus musculus Rodents SPHK2 SPHK2 ncbigene_symbol Sphk2 56632
Mus musculus Rodents SPT3 SPT3 ncbigene_synonym Supt3 109115
Mus musculus Rodents SPT3 SPT3 ncbigene_synonym Dcpp3 620253
Mus musculus Rodents ASAH3 ASAH3 ncbigene_synonym Acer1 171168
Mus musculus Rodents ASAH2 ASAH2 ncbigene_symbol Asah2 54447
Mus musculus Rodents CerS4 CERS4 ncbigene_symbol Cers4 67260
Mus musculus Rodents CerS2 CERS2 ncbigene_symbol Cers2 76893
Mus musculus Rodents Cers1 CERS1 ncbigene_symbol Cers1 93898
Mus musculus Rodents Cers3 CERS3 ncbigene_symbol Cers3 545975
Mus musculus Rodents Cers6 CERS6 ncbigene_symbol Cers6 241447
Mus musculus Rodents DES2 DES2 ncbigene_synonym Degs2 70059
Mus musculus Rodents CERT CERT ncbigene_synonym Cert1 68018
Mus musculus Rodents CERK CERK ncbigene_symbol Cerk 223753
Mus musculus Rodents SMPD2 SMPD2 ncbigene_symbol Smpd2 20598
Bos taurus Mammals PPAP2A PPAP2A ncbigene_synonym PLPP1 617172
Bos taurus Mammals SPHK2 SPHK2 ncbigene_symbol SPHK2 533103
Bos taurus Mammals ASAH3 ASAH3 ncbigene_synonym ACER1 518021
Bos taurus Mammals ASAH2 ASAH2 ncbigene_symbol ASAH2 100336736
Bos taurus Mammals CerS4 CERS4 ncbigene_symbol CERS4 505233
Bos taurus Mammals CerS2 CERS2 ncbigene_symbol CERS2 539223
Bos taurus Mammals Cers1 CERS1 ncbigene_symbol CERS1 615296
Bos taurus Mammals Cers3 CERS3 ncbigene_symbol CERS3 614354
Bos taurus Mammals Cers6 CERS6 ncbigene_symbol CERS6 616901
Bos taurus Mammals CERT CERT ncbigene_synonym CERT1 286797
Bos taurus Mammals CERK CERK ncbigene_symbol CERK 100336737
Bos taurus Mammals SMPD2 SMPD2 ncbigene_symbol SMPD2 509018
Oryctolagus cuniculus Mammals PPAP2A PPAP2A ncbigene_synonym PLPP1 100008821
Oryctolagus cuniculus Mammals SPHK2 SPHK2 ncbigene_symbol SPHK2 103346370
Oryctolagus cuniculus Mammals CerS4 CERS4 ncbigene_symbol CERS4 100352973
Oryctolagus cuniculus Mammals CerS2 CERS2 ncbigene_symbol CERS2 100355139
Oryctolagus cuniculus Mammals Cers1 CERS1 ncbigene_symbol CERS1 127485960
Oryctolagus cuniculus Mammals Cers3 CERS3 ncbigene_symbol CERS3 100337851
Oryctolagus cuniculus Mammals Cers6 CERS6 ncbigene_symbol CERS6 100344726
Oryctolagus cuniculus Mammals CERK CERK ncbigene_symbol CERK 100359094
Oryctolagus cuniculus Mammals SMPD2 SMPD2 ncbigene_symbol SMPD2 100348153
Capra hircus Mammals SPHK2 SPHK2 ncbigene_symbol SPHK2 102184187
Capra hircus Mammals CerS4 CERS4 ncbigene_symbol CERS4 102174737
Capra hircus Mammals CerS2 CERS2 ncbigene_symbol CERS2 102182556
Capra hircus Mammals Cers1 CERS1 ncbigene_symbol CERS1 102189571
Capra hircus Mammals Cers3 CERS3 ncbigene_symbol CERS3 102169911
Capra hircus Mammals Cers6 CERS6 ncbigene_symbol CERS6 102176466
Capra hircus Mammals CERK CERK ncbigene_symbol CERK 102180489
Capra hircus Mammals SMPD2 SMPD2 ncbigene_symbol SMPD2 102186017
Drosophila melanogaster Invertebrates SoP SOP ncbigene_synonym RpS2 34309
Drosophila melanogaster Invertebrates SoP SOP ncbigene_synonym Arpc1 34793
Drosophila melanogaster Invertebrates SPTI SPTI ncbigene_symbol Spt-I 36448
Drosophila melanogaster Invertebrates SPT2 SPT2 ncbigene_synonym lace 34910
Drosophila melanogaster Invertebrates SPT2 SPT2 ncbigene_synonym CG5815 43266
Drosophila melanogaster Invertebrates SPHK2 SPHK2 ncbigene_synonym Sk2 326219
Drosophila melanogaster Invertebrates SPT3 SPT3 ncbigene_symbol Spt3 41461
Drosophila melanogaster Invertebrates Sa SA ncbigene_symbol SA 33974
Drosophila melanogaster Invertebrates Sa SA ncbigene_symbol sa 40367
Drosophila melanogaster Invertebrates So SO ncbigene_symbol so 35662
Drosophila melanogaster Invertebrates Cerss CERS ncbigene_synonym schlank 50392
Drosophila melanogaster Invertebrates DESI DESI ncbigene_symbol Desi 41292
Drosophila melanogaster Invertebrates Cer CER ncbigene_symbol cer 37229
Drosophila melanogaster Invertebrates CERT CERT ncbigene_symbol cert 38928
Drosophila melanogaster Invertebrates CERK CERK ncbigene_symbol Cerk 40640
Drosophila melanogaster Invertebrates SMS2 SMS2 ncbigene_synonym ks-2 251560
Drosophila melanogaster Invertebrates SM SM ncbigene_symbol sm 37254

Chemical mentions

Word Match MeSH Name ChEBI
Palmitoyl-CoA Palmitoyl Coenzyme A mesh:D010171 palmitoyl-CoA chebi:15525
Serine Serine mesh:D012694 L-serine chebi:17115

Disease mentions

Word Match MeSH Name DOID