DNA Damage Response: Making it safe to play with knives

(A) Rapid association of Ku to DSBs promotes NHEJ by recruiting DNA-PKcs. Sequential phosphorylation events on multiple DNA-PKcs amino acid clusters favors the initial processing of DNA ends by ARTEMIS, followed by DNA-PKcs-dependent protection of DNA ends required for DNA ligation. (B) Alternatively to NHEJ, MRN, which is initially recruited to DSBs by PARP in competition with Ku, mediates the initial stages of DSB resection together with CtIP and BRCA1 to promote homologous recombination in S and G2. 53BP1 has an inhibitory role on DSB resection and is negatively regulated by BRCA1 by unknown mechanisms. The MRN/CtIP/BRCA1 complex can also promote DSB resection following deprotection of DNA ends when NHEJ fails. Extensive DSB resection and formation of RPA-coated 3′-ssDNA ends is induced by EXO1 and BLM. ATM plays a central role in the regulation of DSB resection as described in the main text. Displacement of RPA from the 3′-ssDNA ends and assembly of RAD51 filaments mediated by BRCA2 leads to strand invasion into homologous DNA sequences. Recruitment of RAD51 to ssDNA ends is regulated by the ATR pathway, which is activated following DSB resection. D-loop structures formed after strand invasion can be cleaved by MUS81/EME1 or displaced by RTEL1 during SDSA to generate crossover or non-crossover events, respectively. Non-crossovers are generated also by dissolution of Holliday junctions (HJs) by the BLM/TOPOIII complex, whereas HJ resolution by the nucleases GEN1 and SLX1/SLX4, which associates with MUS81/EME1, can generate both crossover and non-crossover events. (C) Limited DSB resection carried out by CtIP and MRN in G1 results in alternative NHEJ. (D) Following DSB resection, 3′-ssDNA ends with homologous sequences can be directly annealed by RAD52. Post-translational modifications are indicated as in .
DNA Damage Response: Making it safe to play with knives

Publication

The DNA Damage Response: Making it safe to play with knives. () Alberto Ciccia, et al. Mol Cell. ;40(2):179-204. Figure: F2.

Gene mentions


Organism Group Word Match Source NCBI Symbol NCBI ID
Drosophila melanogaster Invertebrates DSB DSB ncbigene_symbol dsb 38252
Drosophila melanogaster Invertebrates PARP PARP ncbigene_symbol Parp 3355109
Drosophila melanogaster Invertebrates ATM ATM ncbigene_synonym tefu 41839
Drosophila melanogaster Invertebrates BLM BLM ncbigene_symbol Blm 41366
Drosophila melanogaster Invertebrates EKO EKO ncbigene_synonym Sh 32780
Drosophila melanogaster Invertebrates APA APA ncbigene_synonym en 36240
Drosophila melanogaster Invertebrates APA APA ncbigene_synonym Sap-r 43662
Drosophila melanogaster Invertebrates SSA SSA ncbigene_synonym ss 41988
Drosophila melanogaster Invertebrates PRes PRES ncbigene_synonym Psn 40260
Drosophila melanogaster Invertebrates ALO ALO ncbigene_symbol alo 247746
Drosophila melanogaster Invertebrates ATR ATR ncbigene_synonym mei-41 32608
Drosophila melanogaster Invertebrates ATR ATR ncbigene_synonym put 41772
Drosophila melanogaster Invertebrates ATR ATR ncbigene_synonym RYa-R 43253
Drosophila melanogaster Invertebrates CDK CDK ncbigene_synonym Cdk4 36854
Drosophila melanogaster Invertebrates RPA RPA ncbigene_synonym RPA3 32113
Drosophila melanogaster Invertebrates RPA RPA ncbigene_synonym RPA2 35364
Drosophila melanogaster Invertebrates RPA RPA ncbigene_synonym RPA1 40972
Drosophila melanogaster Invertebrates RWi RWI ncbigene_symbol rwi 252571
Drosophila melanogaster Invertebrates MUS MUS ncbigene_synonym mbm 33194
Drosophila melanogaster Invertebrates EMEI EMEI ncbigene_symbol emei 39250
Homo sapiens Primates PARP PARP ncbigene_synonym PARP1 142
Homo sapiens Primates PARP PARP ncbigene_synonym COL11A2 1302
Homo sapiens Primates PARP PARP famplex_relations PARP2 10038
Homo sapiens Primates PARP PARP famplex_relations PARP3 10039
Homo sapiens Primates PARP PARP famplex_relations PARP4 143
Homo sapiens Primates PARP PARP famplex_relations PARP6 56965
Homo sapiens Primates PARP PARP famplex_relations PARP8 79668
Homo sapiens Primates PARP PARP famplex_relations PARP9 83666
Homo sapiens Primates PARP PARP famplex_relations PARP10 84875
Homo sapiens Primates PARP PARP famplex_relations PARP11 57097
Homo sapiens Primates PARP PARP famplex_relations PARP12 64761
Homo sapiens Primates PARP PARP famplex_relations PARP14 54625
Homo sapiens Primates PARP PARP famplex_relations PARP15 165631
Homo sapiens Primates PARP PARP famplex_relations PARP16 54956
Homo sapiens Primates PARP PARP famplex_relations TNKS 8658
Homo sapiens Primates PARP PARP famplex_relations TNKS2 80351
Homo sapiens Primates PARP PARP famplex_relations TIPARP 25976
Homo sapiens Primates DNA-PKCS DNA-PKCS ncbigene_synonym PRKDC 5591
Homo sapiens Primates Pca PCA ncbigene_synonym FLVCR1 28982
Homo sapiens Primates PKce PKCE ncbigene_synonym PRKCE 5581
Homo sapiens Primates ATM ATM ncbigene_symbol ATM 472
Homo sapiens Primates PKes PKE ncbigene_synonym STK32C 282974
Homo sapiens Primates BLM BLM ncbigene_symbol BLM 641
Homo sapiens Primates APA APA ncbigene_synonym ENPEP 2028
Homo sapiens Primates SSA SSA ncbigene_synonym CALR 811
Homo sapiens Primates SSA SSA ncbigene_synonym TRIM21 6737
Homo sapiens Primates PRes PRES ncbigene_synonym SLC26A5 375611
Homo sapiens Primates ATR ATR ncbigene_symbol ATR 545
Homo sapiens Primates ATR ATR ncbigene_synonym ANTXR1 84168
Homo sapiens Primates ATR ATR ncbigene_synonym MMAB 326625
Homo sapiens Primates ATR ATR ncbigene_synonym SERPINA2 390502
Homo sapiens Primates XPF XPF ncbigene_synonym ERCC4 2072
Homo sapiens Primates CDK CDK famplex_relations CDKL1 8814
Homo sapiens Primates CDK CDK famplex_relations CDKL2 8999
Homo sapiens Primates CDK CDK famplex_relations CDKL3 51265
Homo sapiens Primates CDK CDK famplex_relations CDKL4 344387
Homo sapiens Primates CDK CDK famplex_relations CDKL5 6792
Homo sapiens Primates CDK CDK famplex_relations CDK3 1018
Homo sapiens Primates CDK CDK famplex_relations CDK4 1019
Homo sapiens Primates CDK CDK famplex_relations CDK5 1020
Homo sapiens Primates CDK CDK famplex_relations CDK6 1021
Homo sapiens Primates CDK CDK famplex_relations CDK7 1022
Homo sapiens Primates CDK CDK famplex_relations CDK8 1024
Homo sapiens Primates CDK CDK famplex_relations CDK9 1025
Homo sapiens Primates CDK CDK famplex_relations CDK10 8558
Homo sapiens Primates CDK CDK famplex_relations CDK11A 728642
Homo sapiens Primates CDK CDK famplex_relations CDK11B 984
Homo sapiens Primates CDK CDK famplex_relations CDK12 51755
Homo sapiens Primates CDK CDK famplex_relations CDK13 8621
Homo sapiens Primates CDK CDK famplex_relations CDK14 5218
Homo sapiens Primates CDK CDK famplex_relations CDK15 65061
Homo sapiens Primates CDK CDK famplex_relations CDK16 5127
Homo sapiens Primates CDK CDK famplex_relations CDK17 5128
Homo sapiens Primates CDK CDK famplex_relations CDK18 5129
Homo sapiens Primates CDK CDK famplex_relations CDK19 23097
Homo sapiens Primates CDK CDK famplex_relations CDK20 23552
Homo sapiens Primates CDK CDK famplex_relations CDK1 983
Homo sapiens Primates CDK CDK famplex_relations CDK2 1017
Homo sapiens Primates XLF XLF ncbigene_synonym NHEJ1 79840
Homo sapiens Primates RPA RPA ncbigene_synonym RPA1 6117
Homo sapiens Primates RPA RPA famplex_relations RPA2 6118
Homo sapiens Primates RPA RPA famplex_relations RPA3 6119

Chemical mentions

Word Match MeSH Name ChEBI
PRO Proline mesh:D011392 L-proline chebi:17203

Disease mentions

Word Match MeSH Name DOID