Ubiquitin in NFKB Signaling

Binding of TNFα to its receptor induces the recruitment of signaling proteins, including the adaptor TRADD, ubiquitin ligases TRAF2, TRAF5, cIAP1 and cIAP2, and protein kinase RIP1. RIP1 and TRAFs are polyubiquitinated by TRAFs and/or cIAPs, and the polyubiquitin chains recruit and activate the TAK1 and IKK complexes, leading to activation of NF-κB and MAP kinases (e.g, JNK). To shut down the signaling cascades, the deubiquitination enzymes A20 and CYLD remove the polyubiquitin chains from RIP1 and TRAFs. In addition, A20 forms a ubiquitin-editing complex with the ubiquitin-binding protein TAX1BP1 and the HECT domain ubiquitin ligase ITCH. This complex targets RIP1 for K48 polyubiquitination and proteasomal degradation. Ubiquitination and deubiquitination also regulate the RIG-I pathway, which detect viral infection in the cytosol. Binding of RIG-I to viral RNA triggers its K63 polyubiquitination by the RING domain E3 TRIM25. RIG-I then interacts with the mitochondrial adaptor protein MAVS, which recruits TRAF6 and TRAF3 to activate IKK and TBK1, respectively. TBK1 phosphorylates IRF3, leading to induction of type-I interferons. CYLD and DUBA are deubiquitination enzymes that remove K63 polyubiquitin chains from RIG-I and TRAF3, respectively, thereby damping the antiviral response.
Ubiquitin in NFKB Signaling

Publication

Ubiquitin in NF-κB Signaling. () Yu-Hsin Chiu, et al. Chem Rev. ;109(4):1549-1560. Figure: F3.

Gene mentions


Organism Group Word Match Source NCBI Symbol NCBI ID
Homo sapiens Primates TNFa TNFA ncbigene_synonym TNF 7124
Homo sapiens Primates TNF-R1 TNFR1 ncbigene_synonym TNFRSF1A 7132
Homo sapiens Primates A20 A20 ncbigene_synonym TNFAIP3 7128
Homo sapiens Primates A20 A20 ncbigene_synonym IGKV1-27 28935
Homo sapiens Primates TRADD TRADD ncbigene_symbol TRADD 8717
Homo sapiens Primates CYLD CYLD ncbigene_symbol CYLD 1540
Homo sapiens Primates TAB TAB famplex_relations TAB1 10454
Homo sapiens Primates TAB TAB famplex_relations TAB2 23118
Homo sapiens Primates TAB TAB famplex_relations TAB3 257397
Homo sapiens Primates MAVS MAVS ncbigene_symbol MAVS 57506
Homo sapiens Primates NEMO NEMO ncbigene_synonym IKBKG 8517
Homo sapiens Primates TANK TANK ncbigene_symbol TANK 10010
Homo sapiens Primates DUBA DUBA ncbigene_synonym OTUD5 55593
Homo sapiens Primates p65 P65 ncbigene_synonym RELA 5970
Homo sapiens Primates p65 P65 ncbigene_synonym SYT1 6857
Homo sapiens Primates p65 P65 ncbigene_synonym GORASP1 64689
Homo sapiens Primates p65 P65 ncbigene_synonym WNK1 65125
Homo sapiens Primates IRF3 IRF3 ncbigene_symbol IRF3 3661
Homo sapiens Primates JNK JNK ncbigene_synonym MAPK8 5599
Homo sapiens Primates JNK JNK famplex_relations MAPK9 5601
Homo sapiens Primates JNK JNK famplex_relations MAPK10 5602
Homo sapiens Primates pes PES ncbigene_synonym PES1 23481
Mus musculus Rodents TNFa TNFA ncbigene_synonym Tnf 21926
Mus musculus Rodents TNF-R1 TNF-R1 ncbigene_synonym Tnfrsf1a 21937
Mus musculus Rodents A20 A20 ncbigene_synonym Tnfaip3 21929
Mus musculus Rodents TRADD TRADD ncbigene_symbol Tradd 71609
Mus musculus Rodents CYLD CYLD ncbigene_symbol Cyld 74256
Mus musculus Rodents MAVS MAVS ncbigene_symbol Mavs 228607
Mus musculus Rodents NEMO NEMO ncbigene_synonym Ikbkg 16151
Mus musculus Rodents TANK TANK ncbigene_symbol Tank 21353
Mus musculus Rodents DUBA DUBA ncbigene_synonym Otud5 54644
Mus musculus Rodents p65 P65 ncbigene_synonym Rela 19697
Mus musculus Rodents p65 P65 ncbigene_synonym Gorasp1 74498
Mus musculus Rodents IRF3 IRF3 ncbigene_symbol Irf3 54131
Mus musculus Rodents JNK JNK ncbigene_synonym Mapk8 26419
Mus musculus Rodents (pso( PSO ncbigene_synonym Pipox 19193
Cervus elaphus Mammals TNFa TNFA ncbigene_synonym TNF 122697293
Cervus elaphus Mammals TRADD TRADD ncbigene_symbol TRADD 122691832
Cervus elaphus Mammals CYLD CYLD ncbigene_symbol CYLD 122691702
Cervus elaphus Mammals MAVS MAVS ncbigene_symbol MAVS 122682146
Cervus elaphus Mammals TANK TANK ncbigene_symbol TANK 122688357
Cervus elaphus Mammals IRF3 IRF3 ncbigene_symbol IRF3 122692336
Drosophila melanogaster Invertebrates TNFa TNFA ncbigene_synonym egr 36054
Drosophila melanogaster Invertebrates CYLD CYLD ncbigene_symbol CYLD 34380
Drosophila melanogaster Invertebrates TAB TAB ncbigene_synonym Tab2 37216
Drosophila melanogaster Invertebrates TAB TAB ncbigene_synonym Abd-B 47763
Drosophila melanogaster Invertebrates NEMO NEMO ncbigene_synonym nmo 38890
Drosophila melanogaster Invertebrates TANK TANK ncbigene_symbol tank 33684
Drosophila melanogaster Invertebrates DUBA DUBA ncbigene_symbol Duba 39302
Drosophila melanogaster Invertebrates p65 P65 ncbigene_synonym dl 35047
Drosophila melanogaster Invertebrates p65 P65 ncbigene_synonym wash 36311
Drosophila melanogaster Invertebrates JNK JNK ncbigene_synonym bsk 44801
Drosophila melanogaster Invertebrates pes PES ncbigene_symbol pes 34087
Danio rerio Vertebrates TNFa TNFA ncbigene_symbol tnfa 405785
Danio rerio Vertebrates TNFa TNFA ncbigene_synonym tnfb 554167
Danio rerio Vertebrates TRADD TRADD ncbigene_symbol tradd 58130
Danio rerio Vertebrates CYLD CYLD ncbigene_synonym cylda 556823
Danio rerio Vertebrates MAVS MAVS ncbigene_symbol mavs 562867
Danio rerio Vertebrates NEMO NEMO ncbigene_synonym ikbkg 541530
Danio rerio Vertebrates TANK TANK ncbigene_symbol tank 767660
Danio rerio Vertebrates DUBA DUBA ncbigene_synonym otud5a 555459
Danio rerio Vertebrates p65 P65 ncbigene_synonym rela 415099
Danio rerio Vertebrates IRF3 IRF3 ncbigene_symbol irf3 564854
Danio rerio Vertebrates JNK JNK ncbigene_synonym mapk8b 65236
Danio rerio Vertebrates pes PES ncbigene_symbol pes 30228

Chemical mentions

Word Match MeSH Name ChEBI

Disease mentions

Word Match MeSH Name DOID