Glycerol biosynthesis and other major pathways contributing to cytosolic NAD+/NADH balance in S

Glycerol biosynthesis and other major pathways contributing to cytosolic NAD+/NADH balance in S. cerevisiae. All genes with roles in either increasing or abolishing glycerol formation as well as accumulating l-G3P are included. (A) Glycolytic pathway linked to the formation of glycerol, ethanol, and acetate. (B) Redox factor utilization during glutamate formation from 2-oxoglutarate modified per data from Nissen et al. () to reduce cytosolic NADH generation and glycerol formation. (C) Glycerol overproduction in S. cerevisiae, per data from Geertman et al. (), with formate dehydrogenase (FDH1) overexpression and formate feeding to generate an additional cytosolic NADH source. Gene names: ADH1, alcohol dehydrogenase; ALD4/5/6, cytosolic and mitochondrial acetaldehyde dehydrogenases; GPD1/2, cytosolic l-G3P dehydrogenase; GPP1/2, l-glycerol 3-phosphatase; GUT2, mitochondrial FAD+-dependent G3P dehydrogenase; FDH1/2, formate dehydrogenase; NDE1/2, external mitochondrial NADH dehydrogenase; PDC1/2/5/6, PDC; TPI1, triosephosphate isomerase; GLT1, glutamate synthase (NADH); GLN1, glutamine synthetase; GDH1, glutamate dehydrogenase (NADP+); GDH2, glutamate dehydrogenase (NAD+); FPS1, glycerol facilitator (glycerol export). FBP, fructose-1,6-bisphosphate; GAP, glyceraldehyde phosphate; Pi, inorganic phosphate; NH4+, ammonium ions.
Glycerol biosynthesis and other major pathways contributing to cytosolic NAD+/NADH balance in S

Publication

Progress in Metabolic Engineering of Saccharomyces cerevisiae. (2008) Elke Nevoigt. Microbiol Mol Biol Rev. 2008 Sep;72(3):379-412. Figure: F2.

Gene mentions


Organism Group Word Match Source NCBI Symbol NCBI ID
Homo sapiens Primates NADPH NADPH ncbigene_synonym DECR1 1666
Homo sapiens Primates ATP ATP ncbigene_synonym ATP8A2 51761
Homo sapiens Primates GLT1 GLT1 ncbigene_synonym SLC1A2 6506
Homo sapiens Primates GDH1 GDH1 ncbigene_synonym GLUD1 2746
Homo sapiens Primates GDH2 GDH2 ncbigene_synonym GLUD2 2747
Homo sapiens Primates GDH2 GDH2 ncbigene_synonym GPD2 2820
Homo sapiens Primates ADP ADP ncbigene_synonym WDTC1 23038
Homo sapiens Primates FBP FBP ncbigene_synonym FBP1 2203
Homo sapiens Primates FBP FBP ncbigene_synonym FOLR1 2348
Homo sapiens Primates FBP FBP ncbigene_synonym FOLR2 2350
Homo sapiens Primates FBP FBP ncbigene_synonym ECB2 8056
Homo sapiens Primates FBP FBP ncbigene_synonym FUBP1 8880
Homo sapiens Primates FBP FBP ncbigene_synonym RAB14 51552
Homo sapiens Primates NDE1/2 NDE1 ncbigene_symbol NDE1 54820
Homo sapiens Primates NDE1/2 NDE2 ncbigene_synonym NDEL1 81565
Homo sapiens Primates GAP GAP ncbigene_synonym RASA1 5921
Homo sapiens Primates GAP GAP ncbigene_synonym RGS6 9628
Homo sapiens Primates TPI1 TPI1 ncbigene_symbol TPI1 7167
Homo sapiens Primates GPD1/2 GPD1 ncbigene_symbol GPD1 2819
Homo sapiens Primates ADH1 ADH1 ncbigene_synonym ADH1A 124
Saccharomyces cerevisiae S288C Plants and Fungi GLT1 GLT1 ncbigene_symbol GLT1 851383
Saccharomyces cerevisiae S288C Plants and Fungi GDH1 GDH1 ncbigene_symbol GDH1 854557
Saccharomyces cerevisiae S288C Plants and Fungi GLN1 GLN1 ncbigene_symbol GLN1 856147
Saccharomyces cerevisiae S288C Plants and Fungi GDH2 GDH2 ncbigene_symbol GDH2 851311
Saccharomyces cerevisiae S288C Plants and Fungi NDE1/2 NDE1 ncbigene_symbol NDE1 855176
Saccharomyces cerevisiae S288C Plants and Fungi NDE1/2 NDE2 ncbigene_symbol NDE2 851474
Saccharomyces cerevisiae S288C Plants and Fungi TPI1 TPI1 ncbigene_symbol TPI1 851620
Saccharomyces cerevisiae S288C Plants and Fungi GPD1/2 GPD2 ncbigene_symbol GPD2 854095
Saccharomyces cerevisiae S288C Plants and Fungi GPD1/2 GPD1 ncbigene_symbol GPD1 851539
Saccharomyces cerevisiae S288C Plants and Fungi GUT2 GUT2 ncbigene_symbol GUT2 854651
Saccharomyces cerevisiae S288C Plants and Fungi GPP1/2 GPP2 ncbigene_symbol GPP2 856791
Saccharomyces cerevisiae S288C Plants and Fungi GPP1/2 GPP1 ncbigene_symbol GPP1 854758
Saccharomyces cerevisiae S288C Plants and Fungi PDC1 PDC1 ncbigene_symbol PDC1 850733
Saccharomyces cerevisiae S288C Plants and Fungi FDH1 FDH1 ncbigene_symbol FDH1 854570
Saccharomyces cerevisiae S288C Plants and Fungi FDH1/2 FDH2 ncbigene_symbol FDH2 855853
Saccharomyces cerevisiae S288C Plants and Fungi FDH1/2 FDH2 ncbigene_synonym YPL276W 2827705
Saccharomyces cerevisiae S288C Plants and Fungi FPS1 FPS1 ncbigene_symbol FPS1 850683
Saccharomyces cerevisiae S288C Plants and Fungi ALD2/3/6 ALD3 ncbigene_symbol ALD3 855205
Saccharomyces cerevisiae S288C Plants and Fungi ALD2/3/6 ALD2 ncbigene_symbol ALD2 855206
Saccharomyces cerevisiae S288C Plants and Fungi ALD2/3/6 ALD6 ncbigene_symbol ALD6 856044
Saccharomyces cerevisiae S288C Plants and Fungi ADH1 ADH1 ncbigene_symbol ADH1 854068

Chemical mentions

Word Match MeSH Name ChEBI
Acetaldehyde Acetaldehyde mesh:D000079 acetaldehyde chebi:15343
Acetate Acetates mesh:D000085 acetate ester chebi:47622
Ethanol Ethanol mesh:D000431 ethanol chebi:16236
Glucose Glucose mesh:D005947 D-glucopyranose chebi:4167
Glycerol Glycerol mesh:D005990 glycerol chebi:17754
Pyruvate NA mesh:D011773
Glutamate NA mesh:D018698

Disease mentions

Word Match MeSH Name DOID