Relative transcript levels for genes from the shikimate and aromatic specific pathways

Relative transcript levels for genes from the shikimate and aromatic specific pathways. Metabolic transcription analysis of genes related to the shikimate pathway and specific aromatic amino acid pathways. Metabolites abbreviations: PEP, phosphoenolpyruvate; E4P, erythrose 4-phosphate; DAHP, 3-deoxy-D-arabino-heptulosonate-7-phosphate; DHQ, 5-dehydroquinate; DHS, 5-dehydroshikimate; SHIK, shikimate; S3P, shikimate 5-phosphate; ESPS, 3-enolpyruvylshimate-5-phosphate; CHO, chorismate; PPA, prephenate; PPY, phenylpyruvate; HPP, 4-hydroxyphenylpyruvate; ANTA, anthranilate; PRAA, N-(5'-Phosphoribosyl)-anthranilate; CDRP, enol-1-o-carboxyphenylamino-1-deoxy-ribulose phosphate; I3GP, indol-3-glycerol phosphate; IND, indole; L-Phe, phenylalanine; L-Tyr, tyrosine; L-Trp, tryptophan, L-Ser, serine; L-Gln, glutamine; L-Glu, glutamate.
Relative transcript levels for genes from the shikimate and aromatic specific pathways
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Publication

Metabolic transcription analysis of engineered Escherichia coli strains that overproduce L-phenylalanine. (2007) José Luis Báez-Viveros, et al. Microb Cell Fact. 2007;6:30-30. Figure: F5.

Gene mentions


Organism Group Word Match Source NCBI Symbol NCBI ID
Homo sapiens Primates PEP PEP ncbigene_synonym PAEP 5047
Homo sapiens Primates PEP PEP ncbigene_synonym PREP 5550
Homo sapiens Primates PEP PEP ncbigene_synonym PTPN22 26191
Homo sapiens Primates arod AROD ncbigene_synonym LNCAROD 101928687
Homo sapiens Primates DHS DHS ncbigene_synonym DHPS 1725
Homo sapiens Primates DHS DHS ncbigene_synonym PIEZO1 9780
Homo sapiens Primates NADPH NADPH ncbigene_synonym DECR1 1666
Homo sapiens Primates SHIK SHIK ncbigene_synonym STK40 83931
Homo sapiens Primates ATP ATP ncbigene_synonym ATP8A2 51761
Homo sapiens Primates arol ARO1 ncbigene_synonym CYP19A1 1588
Homo sapiens Primates ADP ADP ncbigene_synonym WDTC1 23038
Homo sapiens Primates HPP HPP ncbigene_synonym SPTA1 6708
Homo sapiens Primates HPP HPP ncbigene_synonym HPP1 780897
Homo sapiens Primates PPY PPY ncbigene_symbol PPY 5539
Homo sapiens Primates trpA TRPA ncbigene_synonym TPSG1 25823
Escherichia coli str. K-12 substr. MG1655 Bacteria aroF, AROF ncbigene_symbol aroF 947084
Escherichia coli str. K-12 substr. MG1655 Bacteria aroG, AROG ncbigene_symbol aroG 945605
Escherichia coli str. K-12 substr. MG1655 Bacteria aroH AROH ncbigene_symbol aroH 946229
Escherichia coli str. K-12 substr. MG1655 Bacteria aroB AROB ncbigene_symbol aroB 947927
Escherichia coli str. K-12 substr. MG1655 Bacteria arod AROD ncbigene_symbol aroD 946210
Escherichia coli str. K-12 substr. MG1655 Bacteria aroE AROE ncbigene_symbol aroE 947776
Escherichia coli str. K-12 substr. MG1655 Bacteria ydiB YDIB ncbigene_symbol ydiB 946200
Escherichia coli str. K-12 substr. MG1655 Bacteria arok AROK ncbigene_symbol aroK 2847759
Escherichia coli str. K-12 substr. MG1655 Bacteria arol AROL ncbigene_symbol aroL 945031
Escherichia coli str. K-12 substr. MG1655 Bacteria aroA AROA ncbigene_symbol aroA 945528
Escherichia coli str. K-12 substr. MG1655 Bacteria aroC AROC ncbigene_symbol aroC 946814
Escherichia coli str. K-12 substr. MG1655 Bacteria trpE TRPE ncbigene_symbol trpE 945846
Escherichia coli str. K-12 substr. MG1655 Bacteria CHO CHO ncbigene_symbol cho 948996
Escherichia coli str. K-12 substr. MG1655 Bacteria ANTA ANTA ncbigene_synonym nhaA 944758
Escherichia coli str. K-12 substr. MG1655 Bacteria trpD TRPD ncbigene_symbol trpD 945109
Escherichia coli str. K-12 substr. MG1655 Bacteria tyrA TYRA ncbigene_symbol tyrA 947115
Escherichia coli str. K-12 substr. MG1655 Bacteria PPA PPA ncbigene_symbol ppa 948748
Escherichia coli str. K-12 substr. MG1655 Bacteria trpC TRPC ncbigene_symbol trpC 945519
Escherichia coli str. K-12 substr. MG1655 Bacteria tyrB TYRB ncbigene_symbol tyrB 948563
Escherichia coli str. K-12 substr. MG1655 Bacteria aspC ASPC ncbigene_symbol aspC 945553
Escherichia coli str. K-12 substr. MG1655 Bacteria IlvE ILVE ncbigene_symbol ilvE 948278
Escherichia coli str. K-12 substr. MG1655 Bacteria trpA TRPA ncbigene_symbol trpA 946204
Escherichia coli str. K-12 substr. MG1655 Bacteria IND IND ncbigene_synonym tnaA 948221
Escherichia coli str. K-12 substr. MG1655 Bacteria trpB TRPB ncbigene_symbol trpB 945768

Chemical mentions

Word Match MeSH Name ChEBI
Phe Phenylalanine mesh:D010649 phenylalanine chebi:28044
Ser Serine mesh:D012694 L-serine chebi:17115
Trp Tryptophan mesh:D014364 L-tryptophan chebi:16828
Tyr Tyrosine mesh:D014443 L-tyrosine chebi:17895
Glu NA mesh:D018698

Disease mentions

Word Match MeSH Name DOID