Retinoic acid (RA) signaling pathway and CDH candidate genes

Retinoic acid (RA) signaling pathway and CDH candidate genes. Retinol travels to target cells via the blood and is taken up by receptors on the cell surface. Once in the cytoplasm, retinol is converted to retinal by retinol dehydrogenases and then to RA by retinal dehydrogenases, of which RALDH2 is the predominant enzyme. The action of RALDH2 can be inhibited by teratogens, such as nitrofen. Several binding proteins are present in the cytoplasm, including retinol-binding proteins 1 and 2 (RBP1 and RBP2), which bind retinol and retinal, and cellular RA-binding proteins 1 and 2 (CRABP1 and CRABP2). When RA enters the nucleus, it mediates its effects by binding to RA receptors (RARs) and retinoid X receptors (RXRs). RARs and RXRs dimerize and regulate gene expression by binding to short DNA sequences—RA-responsive elements (RAREs) and retinoid X–responsive elements (RXREs)—located in the vicinity of target genes. COUP-TFII expression is upregulated by RA. COUP-TFII can act as a repressor of this pathway by directly sequestering RXR, thereby preventing heterodimerization to RAR and inhibiting gene transcription. This process may be a negative feedback system that precisely balances the transcription of certain genes during diaphragm development. COUP-TFII has been shown to interact physically with FOG2, which, in turn, modulates the transcriptional activity of GATA4, GATA5, and GATA6.
Retinoic acid (RA) signaling pathway and CDH candidate genes

Publication

Genetic Factors in Congenital Diaphragmatic Hernia. (2007) A. M. Holder, et al. Am J Hum Genet. 2007 May;80(5):825-845. Figure: F2.

Gene mentions


Organism Group Word Match Source NCBI Symbol NCBI ID
Homo sapiens Primates CRABPI CRABPI ncbigene_synonym CRABP1 1381
Homo sapiens Primates CRABPI CRABPI ncbigene_synonym RBP1 5947
Homo sapiens Primates CRABP2 CRABP2 ncbigene_symbol CRABP2 1382
Homo sapiens Primates RALDH2 RALDH2 ncbigene_synonym ALDH1A2 8854
Homo sapiens Primates RBP1 RBP1 ncbigene_synonym ARID4A 5926
Homo sapiens Primates RBP2 RBP2 ncbigene_symbol RBP2 5948
Homo sapiens Primates RBP2 RBP2 ncbigene_synonym KDM5A 5927
Homo sapiens Primates RBP2 RBP2 ncbigene_synonym RIMBP2 23504
Homo sapiens Primates RAR RAR ncbigene_synonym RARA 5914
Homo sapiens Primates RAR RAR ncbigene_synonym RAB40B 10966
Homo sapiens Primates RAR RAR famplex_relations RARB 5915
Homo sapiens Primates RAR RAR famplex_relations RARG 5916
Homo sapiens Primates RXR RXR famplex_relations RXRA 6256
Homo sapiens Primates RXR RXR famplex_relations RXRB 6257
Homo sapiens Primates RXR RXR famplex_relations RXRG 6258
Homo sapiens Primates COUP-TFI COUP-TFI ncbigene_synonym NR2F1 7025
Homo sapiens Primates GATAS GATAS ncbigene_synonym GATA5 140628
Homo sapiens Primates FOG2 FOG2 ncbigene_synonym ZFPM2 23414

Chemical mentions

Word Match MeSH Name ChEBI
Nitrofen nitrofen mesh:C007350 nitrofen chebi:7590
Retinol Vitamin A mesh:D014801 all-trans-retinol chebi:17336

Disease mentions

Word Match MeSH Name DOID