Wnt/Beta-catenin pathway and associated ncRNAs
Wnt/β-catenin pathway and associated ncRNAs. When the Wnt signaling pathway is not effectively inhibited by Dickkopf (DKK) or Wnt inhibitory protein (WIF), which interact with lipoprotein receptor-related 5/6 (LRP5/6) to disrupt LRP5/6 and Frizzled (FZD) receptor dimers, Wnt proteins are able to bind to their FZD receptors, leading to dimerization of FZD and LRP5/6 receptors. The formation of FZD/LRP heterodimers induces a conformational change in the receptors, leading to the binding of the cytoplasmic portion of FZD to disheveled (DVL) and phosphorylation of the LRP5/6 tail by GSK3. This phosphorylation event facilitates the recruitment of the scaffold protein Axin. DVL serves as a platform for enhanced interaction between Axin and the LRP5/6 tail. The interaction between Axin, LRP5/6, and DVL disrupts the Destructive Complex (DC), releasing β-catenin. Subsequently, β-catenin translocates into the nucleus, where it displaces corepressor Groucho/transducin with TCF/LEF to form a complex that mediates gene expression. The destruction complex (DC), composed of Axin, adenomatous polyposis (APC), glycogen synthase kinase 3β (GSK3β), and casein kinase 1ɑ (CK1ɑ), functions to maintain β-catenin in an inactive state through phosphorylation by CK1ɑ, facilitating GSK3β-mediated phosphorylation of β-catenin. Subsequent phosphorylation of β-catenin leads to recruitment of β-transducin repeat containing protein (β-Trcp), an E3 ubiquitin ligase that promotes ubiquitination of β-catenin for degradation. The Wnt/β-catenin pathway is also regulated by various ncRNAs

Publication
Noncoding RNA-Mediated Epigenetic Regulation in Hepatic Stellate Cells of Liver Fibrosis (2024) Ruoyu Gao, et al. Noncoding RNA. 2024 Aug;10(4). Figure: F5.Organism | Group | Word | Match | Source | NCBI Symbol | NCBI ID |
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Homo sapiens | Primates | Wnt | WNT | famplex_relations | WNT1 | 7471 |
Homo sapiens | Primates | Wnt | WNT | famplex_relations | WNT2 | 7472 |
Homo sapiens | Primates | Wnt | WNT | famplex_relations | WNT2B | 7482 |
Homo sapiens | Primates | Wnt | WNT | famplex_relations | WNT3 | 7473 |
Homo sapiens | Primates | Wnt | WNT | famplex_relations | WNT3A | 89780 |
Homo sapiens | Primates | Wnt | WNT | famplex_relations | WNT4 | 54361 |
Homo sapiens | Primates | Wnt | WNT | famplex_relations | WNT6 | 7475 |
Homo sapiens | Primates | Wnt | WNT | famplex_relations | WNT7A | 7476 |
Homo sapiens | Primates | Wnt | WNT | famplex_relations | WNT7B | 7477 |
Homo sapiens | Primates | Wnt | WNT | famplex_relations | WNT8A | 7478 |
Homo sapiens | Primates | Wnt | WNT | famplex_relations | WNT8B | 7479 |
Homo sapiens | Primates | Wnt | WNT | famplex_relations | WNT9A | 7483 |
Homo sapiens | Primates | Wnt | WNT | famplex_relations | WNT9B | 7484 |
Homo sapiens | Primates | Wnt | WNT | famplex_relations | WNT10A | 80326 |
Homo sapiens | Primates | Wnt | WNT | famplex_relations | WNT10B | 7480 |
Homo sapiens | Primates | Wnt | WNT | famplex_relations | WNT11 | 7481 |
Homo sapiens | Primates | Wnt | WNT | famplex_relations | WNT16 | 51384 |
Homo sapiens | Primates | Wnt | WNT | famplex_relations | WNT5A | 7474 |
Homo sapiens | Primates | Wnt | WNT | famplex_relations | WNT5B | 81029 |
Homo sapiens | Primates | FZD | FZD | famplex_relations | FZD1 | 8321 |
Homo sapiens | Primates | FZD | FZD | famplex_relations | FZD10 | 11211 |
Homo sapiens | Primates | FZD | FZD | famplex_relations | FZD2 | 2535 |
Homo sapiens | Primates | FZD | FZD | famplex_relations | FZD3 | 7976 |
Homo sapiens | Primates | FZD | FZD | famplex_relations | FZD4 | 8322 |
Homo sapiens | Primates | FZD | FZD | famplex_relations | FZD5 | 7855 |
Homo sapiens | Primates | FZD | FZD | famplex_relations | FZD6 | 8323 |
Homo sapiens | Primates | FZD | FZD | famplex_relations | FZD7 | 8324 |
Homo sapiens | Primates | FZD | FZD | famplex_relations | FZD8 | 8325 |
Homo sapiens | Primates | FZD | FZD | famplex_relations | FZD9 | 8326 |
Homo sapiens | Primates | SNHG7 | SNHG7 | ncbigene_symbol | SNHG7 | 84973 |
Homo sapiens | Primates | GSK3 | GSK3 | famplex_relations | GSK3A | 2931 |
Homo sapiens | Primates | GSK3 | GSK3 | famplex_relations | GSK3B | 2932 |
Homo sapiens | Primates | LRP5 | LRP5 | ncbigene_symbol | LRP5 | 4041 |
Homo sapiens | Primates | LRP5/6 | LRP6 | ncbigene_symbol | LRP6 | 4040 |
Homo sapiens | Primates | DVL | DVL | ncbigene_synonym | DVL1 | 1855 |
Homo sapiens | Primates | DVL | DVL | ncbigene_synonym | DVL1P1 | 8215 |
Homo sapiens | Primates | DVL | DVL | famplex_relations | DVL2 | 1856 |
Homo sapiens | Primates | DVL | DVL | famplex_relations | DVL3 | 1857 |
Homo sapiens | Primates | Axin | AXIN | ncbigene_synonym | AXIN1 | 8312 |
Homo sapiens | Primates | Axin | AXIN | famplex_relations | AXIN2 | 8313 |
Homo sapiens | Primates | miR-17-5p | MIR175P | ncbigene_synonym | MIR17 | 406952 |
Homo sapiens | Primates | LncRNAATB | LNCRNAATB | ncbigene_symbol | LNCRNA-ATB | 114004396 |
Homo sapiens | Primates | CK1 | CK1 | ncbigene_synonym | CSNK1A1 | 1452 |
Homo sapiens | Primates | CK1 | CK1 | ncbigene_synonym | KRT1 | 3848 |
Homo sapiens | Primates | CK1 | CK1 | ncbigene_synonym | CSNK1A1L | 122011 |
Homo sapiens | Primates | miR-200a | MIR-200A | ncbigene_synonym | MIR200A | 406983 |
Homo sapiens | Primates | APC | APC | ncbigene_symbol | APC | 324 |
Homo sapiens | Primates | APC | APC | ncbigene_synonym | PROC | 5624 |
Homo sapiens | Primates | TLE | TLE | famplex_relations | TLE1 | 7088 |
Homo sapiens | Primates | TLE | TLE | famplex_relations | TLE2 | 7089 |
Homo sapiens | Primates | TLE | TLE | famplex_relations | TLE3 | 7090 |
Homo sapiens | Primates | TLE | TLE | famplex_relations | TLE4 | 7091 |
Homo sapiens | Primates | TLE | TLE | famplex_relations | TLE5 | 166 |
Homo sapiens | Primates | TLE | TLE | famplex_relations | TLE6 | 79816 |
Homo sapiens | Primates | TLE | TLE | famplex_relations | TLE7 | 102723796 |
Homo sapiens | Primates | TCF/LEF | TCF | ncbigene_synonym | HNF4A | 3172 |
Homo sapiens | Primates | NEAT1 | NEAT1 | ncbigene_symbol | NEAT1 | 283131 |
Homo sapiens | Primates | Krm1/2 | KRM1 | ncbigene_synonym | KREMEN1 | 83999 |
Homo sapiens | Primates | Krm1/2 | KRM2 | ncbigene_synonym | KREMEN2 | 79412 |
Homo sapiens | Primates | HDAC | HDAC | ncbigene_synonym | HDAC9 | 9734 |
Homo sapiens | Primates | HDAC | HDAC | famplex_relations | HDAC1 | 3065 |
Homo sapiens | Primates | HDAC | HDAC | famplex_relations | HDAC2 | 3066 |
Homo sapiens | Primates | HDAC | HDAC | famplex_relations | HDAC3 | 8841 |
Homo sapiens | Primates | HDAC | HDAC | famplex_relations | HDAC8 | 55869 |
Homo sapiens | Primates | HDAC | HDAC | famplex_relations | HDAC4 | 9759 |
Homo sapiens | Primates | HDAC | HDAC | famplex_relations | HDAC5 | 10014 |
Homo sapiens | Primates | HDAC | HDAC | famplex_relations | HDAC7 | 51564 |
Homo sapiens | Primates | HDAC | HDAC | famplex_relations | HDAC6 | 10013 |
Homo sapiens | Primates | HDAC | HDAC | famplex_relations | HDAC10 | 83933 |
Homo sapiens | Primates | HDAC | HDAC | famplex_relations | SIRT1 | 23411 |
Homo sapiens | Primates | HDAC | HDAC | famplex_relations | SIRT2 | 22933 |
Homo sapiens | Primates | HDAC | HDAC | famplex_relations | SIRT3 | 23410 |
Homo sapiens | Primates | HDAC | HDAC | famplex_relations | SIRT4 | 23409 |
Homo sapiens | Primates | HDAC | HDAC | famplex_relations | SIRT5 | 23408 |
Homo sapiens | Primates | HDAC | HDAC | famplex_relations | SIRT6 | 51548 |
Homo sapiens | Primates | HDAC | HDAC | famplex_relations | SIRT7 | 51547 |
Homo sapiens | Primates | HDAC | HDAC | famplex_relations | HDAC11 | 79885 |
Word | Match | MeSH | Name | ChEBI |
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Disease mentions
Word | Match | MeSH | Name | DOID |
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