Different pathways activated in A
Schematic diagram of different pathways activated in A. melanoxylon. Note, SuSy: sucrose synthase; UGP: UTP–glucose-1-phosphate uridylyltransferase; APS: ADP-glucose; SS: starch synthase; SBE: starch branching enzyme/1,4-alpha-glucan branching enzyme; DBE: debranching enzyme 1/isoamylase; AMY: alpha-amylase; ADH: alcohol dehydrogenase; UGE: UDP-glucose 4-epimerase; UGD: UDP-glucose dehydrogenase; UXS: UDP-XYL synthase; CSLD: cellulose synthase-like D5; XYL: xylan 1,4-beta-xylosidase/Glycosyl hydrolase; XK: xylulose kinase-2/ xylulokinase; XI: xylose isomerase, RPE: ribulose-phosphate 3-epimerase; RSW: ribose 5-phosphate isomerase A; TSL: transketolase; PGM: Phosphoglucomutase/phosphomannomutase; PGI: phosphoglucose isomerase 1/ glucose-6-phosphate isomerase; AACT: acetyl-CoA C-acetyltransferase; HMGS: hydroxymethylglutaryl-CoA synthase, HMGR: hydroxymethylglutaryl-CoA reductase; MK: mevalonate kinase; PMK: phosphomevalonate kinase; MVD: diphosphomevalonate decarboxylase; GGDS: geranylgeranyl diphosphate synthase, type III; FPS: farnesyl-diphosphate; SME: squalene monooxygenase; GES: geranylgeranyl diphosphate synthase, type III; TTS: trimethyltridecatetraene/dimethylnonatriene synthase; ATS: (-)-alpha-terpineol synthase
Publication
Comparative physiological, biochemical, metabolomic, and transcriptomic analyses reveal the formation mechanism of heartwood for Acacia melanoxylon (2024)
Ruping Zhang, et al. BMC Plant Biol. 2024;24(NA). Figure: F7.
| Organism |
Group |
Word |
Match |
Source |
NCBI Symbol |
NCBI ID |
| Homo sapiens |
Primates |
APS |
APS |
ncbigene_synonym |
KLK3 |
354 |
| Homo sapiens |
Primates |
APS |
APS |
ncbigene_synonym |
SH2B2 |
10603 |
| Homo sapiens |
Primates |
UGD |
UGD |
ncbigene_synonym |
UGDH |
7358 |
| Homo sapiens |
Primates |
UGD |
UGD |
ncbigene_synonym |
UXS1 |
80146 |
| Homo sapiens |
Primates |
ADH |
ADH |
ncbigene_synonym |
AVP |
551 |
| Homo sapiens |
Primates |
ADH |
ADH |
famplex_relations |
ADH1A |
124 |
| Homo sapiens |
Primates |
ADH |
ADH |
famplex_relations |
ADH1B |
125 |
| Homo sapiens |
Primates |
ADH |
ADH |
famplex_relations |
ADH1C |
126 |
| Homo sapiens |
Primates |
ADH |
ADH |
famplex_relations |
ADH4 |
127 |
| Homo sapiens |
Primates |
ADH |
ADH |
famplex_relations |
ADH5 |
128 |
| Homo sapiens |
Primates |
ADH |
ADH |
famplex_relations |
ADH6 |
130 |
| Homo sapiens |
Primates |
ADH |
ADH |
famplex_relations |
ADH7 |
131 |
| Homo sapiens |
Primates |
ADH |
ADH |
famplex_relations |
ADHFE1 |
137872 |
| Homo sapiens |
Primates |
XK |
XK |
ncbigene_symbol |
XK |
7504 |
| Homo sapiens |
Primates |
Glc-1P |
GLC1P |
ncbigene_symbol |
GLC1P |
101448070 |
| Homo sapiens |
Primates |
PGM |
PGM |
ncbigene_synonym |
VCAN |
1462 |
| Homo sapiens |
Primates |
PGI |
PGI |
ncbigene_synonym |
BGN |
633 |
| Homo sapiens |
Primates |
PGI |
PGI |
ncbigene_synonym |
GPI |
2821 |
| Homo sapiens |
Primates |
PGI |
PGI |
ncbigene_synonym |
PGPEP1 |
54858 |
| Homo sapiens |
Primates |
Ov1 |
OV1 |
ncbigene_synonym |
PTP4A2 |
8073 |
| Homo sapiens |
Primates |
RPE |
RPE |
ncbigene_symbol |
RPE |
6120 |
| Homo sapiens |
Primates |
TSL |
TSL |
ncbigene_symbol |
TSL |
790953 |
| Homo sapiens |
Primates |
AMY |
AMY |
ncbigene_synonym |
OLFM1 |
10439 |
| Homo sapiens |
Primates |
AMY |
AMY |
ncbigene_synonym |
COL25A1 |
84570 |
| Homo sapiens |
Primates |
cra |
CRA |
ncbigene_synonym |
MTMR11 |
10903 |
| Homo sapiens |
Primates |
cra |
CRA |
ncbigene_synonym |
LUC7L3 |
51747 |
| Homo sapiens |
Primates |
AACT |
AACT |
ncbigene_synonym |
SERPINA3 |
12 |
| Homo sapiens |
Primates |
HMGR |
HMGR |
ncbigene_synonym |
HMGA1 |
3159 |
| Homo sapiens |
Primates |
PMK |
PMK |
ncbigene_synonym |
PMVK |
10654 |
| Homo sapiens |
Primates |
MVD |
MVD |
ncbigene_symbol |
MVD |
4597 |
| Homo sapiens |
Primates |
FPS |
FPS |
ncbigene_synonym |
FDPS |
2224 |
| Homo sapiens |
Primates |
FPS |
FPS |
ncbigene_synonym |
FES |
2242 |
| Homo sapiens |
Primates |
SME |
SME |
ncbigene_synonym |
SNRPE |
6635 |
| Homo sapiens |
Primates |
GES |
GES |
ncbigene_synonym |
REM1 |
28954 |
| Homo sapiens |
Primates |
ATS |
ATS |
ncbigene_synonym |
COL4A5 |
1287 |
| Homo sapiens |
Primates |
ATS |
ATS |
ncbigene_synonym |
SLC2A10 |
81031 |
| Word |
Match |
MeSH |
Name |
ChEBI |
| Sucrose |
sucrose |
|
sucrose |
chebi:17992 |
| APS |
APS |
|
diammonium [(sulfonatoperoxy)sulfonyl]oxidanide |
chebi:156543 |
| ADP-glucose |
ADP-glucose |
|
adenosine 5'-[3-(alpha-D-glucopyranosyl) dihydrogen diphosphate] |
chebi:15751 |
| XYL |
Xyl |
|
xylo-pentose |
chebi:18222 |
| D-xylose |
D-xylose |
|
D-xylopyranose |
chebi:53455 |
| ADH |
ADH |
|
1-{[(4R,7S,10S,13S,16S,19R)-19-amino-7-(2-amino-2-oxoethyl)-10-(3-amino-3-oxopropyl)-13-benzyl-16-(4-hydroxybenzyl)-6,9,12,15,18-pentaoxo-1,2-dithia-5,8,11,14,17-pentaazacycloicosan-4-yl]carbonyl}-L-prolyl-L-arginylglycinamide |
chebi:34543 |
| PGM |
PGM |
|
|
chebi:33365 |
| eve |
Eve |
|
|
chebi:132237 |
| PGI |
PGI |
|
|
chebi:26345 |
| Amylose |
Amylose |
|
(1->4)-alpha-D-glucopyranan |
chebi:28102 |
| DBE |
DBE |
|
1,2-dibromoethane |
chebi:28534 |
| Maltose |
MALTOSE |
|
alpha-maltose |
chebi:18167 |
| Acetyl-CoA |
acetyl-CoA |
|
3'-phosphonatoadenosine 5'-(3-{(3R)-4-[(3-{[2-(acetylsulfanyl)ethyl]amino}-3-oxopropyl)amino]-3-hydroxy-2,2-dimethyl-4-oxobutyl} diphosphate) |
chebi:57288 |
| Acetoacetyl-CoA |
acetoacetyl-CoA |
|
3'-phosphonatoadenosine 5'-{3-[(3R)-3-hydroxy-2,2-dimethyl-4-oxo-4-{[3-oxo-3-({2-[(3-oxobutanoyl)sulfanyl]ethyl}amino)propyl]amino}butyl] diphosphate} |
chebi:57286 |
| TMTT |
TMTT |
|
(3E,7E)-4,8,12-trimethyltrideca 1,3,7,11-tetraene |
chebi:74322 |
| ATS |
ATS |
|
diammonium sulfurothioate |
chebi:147402 |
Disease mentions
| Word |
Match |
MeSH |
Name |
DOID |
