Mechanisms of human NLRP3 inflammasome activation and regulation

The mechanisms of human NLRP3 inflammasome activation and regulation. The activation of NLRP3 inflammasome occurs either through a canonical two-step pathway or a non-canonical pathway, and a direct or alternative pathway. The canonical activation pathway involved 2 steps: a priming (signal 1, left panel) and an activation (signal 2, second panel from left) steps. Priming step is induced by NLRP3 signals, including LPS and TNF, IL-1b, IFNs, lipopolysaccharide (LPS), and sphingosine-1 phosphate (S1P), activate NF-κB that; in turn upregulates the transcription of Nlrp3 gene and other genes (ASC and pro-caspase1) involved in NLRP inflammasome, by interacting with and triggering their receptors. Once transcribed, NLRP3 is pre-activated by interacting with NEK7, forming a complex that will be activated into hetero-complex inflammasome. The canonical activation of NLRP3 inflammasome is induced by signal 2 including PAMPs (nigericin, viral RNA, and MDP) and DAMPs (extracellular ATP, mtDNA, and mtROS) and particulates. The molecular mechanisms behind the polymerization and the activation of NLRP3 inflammasome include activation of several signaling events, including induction of K+ efflux, Ca2+ flux, Cl–efflux, lysosomal disruption, mtROS production, and release of oxidized mtDNA in the cytosolic compartment. Thus, formation of NLRP3 inflammasome includes oligomerization of NLRP3-NEK7, recruitment of ASC, and Casp1. auto-proteolysis of proteolytic cleavage of Casp1 releases p10/p20 active enzyme, which digest Pro-IL-1β and Pro-IL-18 into IL-1β and IL-18 cytokines to promote proinflammatory responses. The subunit p10/p20 of Casp1 also digests GSDMD releasing GSDMD-N that form cell membrane pore to result in pyroptosis of the cell. Non-canonical activation of NLRP3 inflammasome (third panel from left) occurs without priming, as Casp4 is already present in the cytoplasm, and is induced by gram-negative bacteria that release LPS into the cell cytosol. Released LPS activates Casp11 in human (and Casp4/5 in mouse), which cleaves GSDMD complex releasing GSDMD-N that forms gasdermin pores and induces pyroptosis. The gasdermin pore formed constitutes a channel for K+ efflux, which activates the NLRP3 inflammasome, and consequently activate Casp1 and IL-1β and IL-18. The alternative pathway (right panel) activation is induced by TLR4 agonists that activates the TLR4-TRIF-RIPK1-FADD-Casp8 signaling pathway. Consequently, Casp8 activates the NLRP3 inflammasome. Note that, there is no need of K+ efflux, ASC speck formation, to activate inflammasome, and there is no pyroptosis
Mechanisms of human NLRP3 inflammasome activation and regulation

Publication

NLRP inflammasomes in health and disease (2024) Zhihao Xu, et al. Mol Biomed. 2024 Dec;5(NA). Figure: F5.

Gene mentions


Organism Group Word Match Source NCBI Symbol NCBI ID
Homo sapiens Primates TNF TNF ncbigene_symbol TNF 7124
Homo sapiens Primates S1P S1P ncbigene_synonym MBTPS1 8720
Homo sapiens Primates (LPS) LPS ncbigene_synonym IRF6 3664
Homo sapiens Primates IL-1ẞ IL1 ncbigene_synonym IL1A 3552
Homo sapiens Primates IL-1ẞ IL1 ncbigene_synonym IL1B 3553
Homo sapiens Primates S1PR2 S1PR2 ncbigene_symbol S1PR2 9294
Homo sapiens Primates TLR TLR famplex_relations TLR1 7096
Homo sapiens Primates TLR TLR famplex_relations TLR2 7097
Homo sapiens Primates TLR TLR famplex_relations TLR3 7098
Homo sapiens Primates TLR TLR famplex_relations TLR4 7099
Homo sapiens Primates TLR TLR famplex_relations TLR5 7100
Homo sapiens Primates TLR TLR famplex_relations TLR6 10333
Homo sapiens Primates TLR TLR famplex_relations TLR7 51284
Homo sapiens Primates TLR TLR famplex_relations TLR8 51311
Homo sapiens Primates TLR TLR famplex_relations TLR9 54106
Homo sapiens Primates TLR TLR famplex_relations TLR10 81793
Homo sapiens Primates TNFR TNFR ncbigene_synonym TNFRSF1A 7132
Homo sapiens Primates IL-1R1 IL1R1 ncbigene_symbol IL1R1 3554
Homo sapiens Primates NF-kB NF-KB ncbigene_synonym NFKB1 4790
Homo sapiens Primates ATP ATP ncbigene_synonym ATP8A2 51761
Homo sapiens Primates TWIK2 TWIK2 ncbigene_synonym KCNK6 9424
Homo sapiens Primates P2X7 P2X7 ncbigene_synonym P2RX7 5027
Homo sapiens Primates MAVS MAVS ncbigene_symbol MAVS 57506
Homo sapiens Primates Cathepsins CATHEPSIN famplex_relations CTSA 5476
Homo sapiens Primates Cathepsins CATHEPSIN famplex_relations CTSB 1508
Homo sapiens Primates Cathepsins CATHEPSIN famplex_relations CTSC 1075
Homo sapiens Primates Cathepsins CATHEPSIN famplex_relations CTSD 1509
Homo sapiens Primates Cathepsins CATHEPSIN famplex_relations CTSE 1510
Homo sapiens Primates Cathepsins CATHEPSIN famplex_relations CTSF 8722
Homo sapiens Primates Cathepsins CATHEPSIN famplex_relations CTSG 1511
Homo sapiens Primates Cathepsins CATHEPSIN famplex_relations CTSH 1512
Homo sapiens Primates Cathepsins CATHEPSIN famplex_relations CTSK 1513
Homo sapiens Primates Cathepsins CATHEPSIN famplex_relations CTSL 1514
Homo sapiens Primates Cathepsins CATHEPSIN famplex_relations CTSO 1519
Homo sapiens Primates Cathepsins CATHEPSIN famplex_relations CTSS 1520
Homo sapiens Primates Cathepsins CATHEPSIN famplex_relations CTSV 1515
Homo sapiens Primates Cathepsins CATHEPSIN famplex_relations CTSW 1521
Homo sapiens Primates Cathepsins CATHEPSIN famplex_relations CTSZ 1522
Homo sapiens Primates TRIF TRIF ncbigene_synonym TRIM69 140691
Homo sapiens Primates TRIF TRIF ncbigene_synonym TICAM1 148022
Homo sapiens Primates MyD88 MYD88 ncbigene_symbol MYD88 4615
Homo sapiens Primates RIPK RIPK famplex_relations RIPK1 8737
Homo sapiens Primates RIPK RIPK famplex_relations RIPK2 8767
Homo sapiens Primates FAD FAD ncbigene_synonym BRCA2 675
Homo sapiens Primates FAD FAD ncbigene_synonym FANCD2 2177
Homo sapiens Primates FAD FAD ncbigene_synonym PSEN1 5663
Homo sapiens Primates CASP8 CASP8 ncbigene_symbol CASP8 841
Homo sapiens Primates GSDMD GSDMD ncbigene_symbol GSDMD 79792
Homo sapiens Primates NLRP3 NLRP3 ncbigene_symbol NLRP3 114548
Homo sapiens Primates IL-18 IL-18 ncbigene_synonym IL18 3606
Homo sapiens Primates NEK7 NEK7 ncbigene_symbol NEK7 140609
Homo sapiens Primates ASC ASC ncbigene_synonym STS 412
Homo sapiens Primates ASC ASC ncbigene_synonym PYCARD 29108
Homo sapiens Primates IFNAR IFNAR ncbigene_synonym IFNAR1 3454
Homo sapiens Primates IFNAR IFNAR famplex_relations IFNAR2 3455
Homo sapiens Primates p20 P20 ncbigene_synonym TPPP3 51673
Homo sapiens Primates p20 P20 ncbigene_synonym H3P14 107986209
Homo sapiens Primates p10 P10 ncbigene_synonym S100A10 6281
Homo sapiens Primates p10 P10 ncbigene_synonym EXOSC3 51010
Homo sapiens Primates CASP-1 CASP1 ncbigene_symbol CASP1 834
Homo sapiens Primates IFNa/ẞ IFNA ncbigene_synonym IFN1@ 3438
Homo sapiens Primates IFNa/ẞ IFNA ncbigene_synonym IFNA1 3439
Homo sapiens Primates IFNa/ẞ IFNA ncbigene_synonym IFNA2 3440
Homo sapiens Primates IFNa/ẞ IFNA ncbigene_synonym IFNA17 3451
Homo sapiens Primates IFNa/ẞ IFNA famplex_relations IFNA4 3441
Homo sapiens Primates IFNa/ẞ IFNA famplex_relations IFNA5 3442
Homo sapiens Primates IFNa/ẞ IFNA famplex_relations IFNA6 3443
Homo sapiens Primates IFNa/ẞ IFNA famplex_relations IFNA7 3444
Homo sapiens Primates IFNa/ẞ IFNA famplex_relations IFNA8 3445
Homo sapiens Primates IFNa/ẞ IFNA famplex_relations IFNA10 3446
Homo sapiens Primates IFNa/ẞ IFNA famplex_relations IFNA13 3447
Homo sapiens Primates IFNa/ẞ IFNA famplex_relations IFNA14 3448
Homo sapiens Primates IFNa/ẞ IFNA famplex_relations IFNA16 3449
Homo sapiens Primates IFNa/ẞ IFNA famplex_relations IFNA21 3452

Chemical mentions

Word Match MeSH Name ChEBI
RNA RNA RNA chebi:33697
S1P S1P (2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate chebi:37550
LPS LPS chebi:89981
RNA RNA RNA chebi:33697
Ca2+ Ca2+ Ca(2+) chebi:29108
FAD FAD L-phenylalanyl-L-alanyl-L-aspartic acid chebi:73627
Nucleus nucleus nucleus chebi:33252
LPS LPS chebi:89981

Disease mentions

Word Match MeSH Name DOID