Trans-omic analysis reveals opposite metabolic dysregulation between feeding and fasting in liver associated with obesity

Comparison of TCA cycle between ad libitum feeding and 16 h fasting(A) Metabolic reactions, molecules, and regulations in TCA cycle (mmu00020) extracted from the differential regulatory trans-omic network at ad libitum feeding (top left) and 16 h fasting (bottom left), and the numbers of differentially expressed molecules (nodes) and differential regulations (edges) in TCA cycle at ad libitum feeding (top right) and 16 h fasting (bottom right).34 Other descriptions are the same as Figure 6B.(B) Summary of the opposite changes in the metabolites and allosteric regulations between ad libitum feeding (left) and 16 h fasting (right).34 Metabolic pathway names related to metabolites are in parentheses. Arrow, allosteric regulation. Yellow area, the metabolic pathways regulated by allosteric regulators. See also Figures S12–S18.Red, increased molecules or activating regulations in ob/ob mice; blue, decreased molecules or inhibiting regulations in ob/ob mice; magenta, both activated and inhibited metabolic reactions in ob/ob mice; gray, unchanged molecules between WT and ob/ob mice
Trans-omic analysis reveals opposite metabolic dysregulation between feeding and fasting in liver associated with obesity

Publication

Trans-omic analysis reveals opposite metabolic dysregulation between feeding and fasting in liver associated with obesity (2024) Yunfan Bai, et al. iScience. 2024 Mar 15;27(3). Figure: F7.

Gene mentions


Organism Group Word Match Source NCBI Symbol NCBI ID
Homo sapiens Primates mice MICE ncbigene_symbol MICE 4280
Homo sapiens Primates Cebpa CEBPA ncbigene_symbol CEBPA 1050
Homo sapiens Primates Hnf4a HNF4A ncbigene_symbol HNF4A 3172
Homo sapiens Primates Hnf4a HNF4A ncbigene_synonym HNF1A 6927
Homo sapiens Primates Ep300 EP300 ncbigene_symbol EP300 2033
Homo sapiens Primates Brd4 BRD4 ncbigene_symbol BRD4 23476
Homo sapiens Primates Foxa1 FOXA1 ncbigene_symbol FOXA1 3169
Homo sapiens Primates Cebpb CEBPB ncbigene_symbol CEBPB 1051
Homo sapiens Primates Nr3c1 NR3C1 ncbigene_symbol NR3C1 2908
Homo sapiens Primates Rad21 RAD21 ncbigene_symbol RAD21 5885
Homo sapiens Primates Taf3 TAF3 ncbigene_symbol TAF3 83860
Homo sapiens Primates Pparg PPARG ncbigene_symbol PPARG 5468
Homo sapiens Primates Nr1d1 NR1D1 ncbigene_symbol NR1D1 9572
Homo sapiens Primates TF TF ncbigene_symbol TF 7018
Homo sapiens Primates Sdha SDHA ncbigene_symbol SDHA 6389
Homo sapiens Primates Suclg2 SUCLG2 ncbigene_symbol SUCLG2 8801
Homo sapiens Primates Acly ACLY ncbigene_symbol ACLY 47
Homo sapiens Primates Dhtkd1 DHTKD1 ncbigene_symbol DHTKD1 55526
Homo sapiens Primates Aco2 ACO2 ncbigene_symbol ACO2 50
Homo sapiens Primates Cs CS ncbigene_symbol CS 1431
Homo sapiens Primates Pck2 PCK2 ncbigene_symbol PCK2 5106
Homo sapiens Primates Idh2 IDH2 ncbigene_symbol IDH2 3418
Homo sapiens Primates Mdh1 MDH1 ncbigene_symbol MDH1 4190
Homo sapiens Primates Mdh2 MDH2 ncbigene_symbol MDH2 4191
Homo sapiens Primates Aco1 ACO1 ncbigene_symbol ACO1 48
Homo sapiens Primates μmol MOL ncbigene_synonym DUOXA1 90527
Homo sapiens Primates μmol/gprotein GPROTEIN famplex_relations GNAO1 2775
Homo sapiens Primates μmol/gprotein GPROTEIN famplex_relations GNAI1 2770
Homo sapiens Primates μmol/gprotein GPROTEIN famplex_relations GNAI2 2771
Homo sapiens Primates μmol/gprotein GPROTEIN famplex_relations GNAI3 2773
Homo sapiens Primates μmol/gprotein GPROTEIN famplex_relations GNAT1 2779
Homo sapiens Primates μmol/gprotein GPROTEIN famplex_relations GNAT2 2780
Homo sapiens Primates μmol/gprotein GPROTEIN famplex_relations GNAT3 346562
Homo sapiens Primates μmol/gprotein GPROTEIN famplex_relations GNAZ 2781
Homo sapiens Primates μmol/gprotein GPROTEIN famplex_relations GNAS 2778
Homo sapiens Primates μmol/gprotein GPROTEIN famplex_relations GNAL 2774
Homo sapiens Primates μmol/gprotein GPROTEIN famplex_relations GNAQ 2776
Homo sapiens Primates μmol/gprotein GPROTEIN famplex_relations GNA11 2767
Homo sapiens Primates μmol/gprotein GPROTEIN famplex_relations GNA14 9630
Homo sapiens Primates μmol/gprotein GPROTEIN famplex_relations GNA15 2769
Homo sapiens Primates μmol/gprotein GPROTEIN famplex_relations GNA12 2768
Homo sapiens Primates μmol/gprotein GPROTEIN famplex_relations GNA13 10672
Homo sapiens Primates PEP PEP ncbigene_synonym PAEP 5047
Homo sapiens Primates PEP PEP ncbigene_synonym PREP 5550
Homo sapiens Primates PEP PEP ncbigene_synonym PTPN22 26191
Homo sapiens Primates ATP ATP ncbigene_synonym ATP8A2 51761
Homo sapiens Primates GTP GTP ncbigene_synonym MTG1 92170
Homo sapiens Primates NADPH NADPH ncbigene_synonym DECR1 1666
Homo sapiens Primates ADP ADP ncbigene_synonym WDTC1 23038
Homo sapiens Primates Gabpa GABPA ncbigene_symbol GABPA 2551
Homo sapiens Primates Onecut1 ONECUT1 ncbigene_symbol ONECUT1 3175
Homo sapiens Primates Clock CLOCK ncbigene_symbol CLOCK 9575
Homo sapiens Primates Creb1 CREB1 ncbigene_symbol CREB1 1385
Homo sapiens Primates Pbrm1 PBRM1 ncbigene_symbol PBRM1 55193
Homo sapiens Primates Crebbp CREBBP ncbigene_symbol CREBBP 1387
Homo sapiens Primates Rora RORA ncbigene_symbol RORA 6095
Homo sapiens Primates Gps2 GPS2 ncbigene_symbol GPS2 2874
Homo sapiens Primates Hsf1 HSF1 ncbigene_symbol HSF1 3297
Homo sapiens Primates Hsf1 HSF1 ncbigene_synonym NR5A1 2516
Homo sapiens Primates Tbp TBP ncbigene_symbol TBP 6908
Homo sapiens Primates Ncoa2 NCOA2 ncbigene_symbol NCOA2 10499
Homo sapiens Primates Idh3g IDH3G ncbigene_symbol IDH3G 3421
Homo sapiens Primates AMP AMP ncbigene_synonym APRT 353
Homo sapiens Primates AMP AMP ncbigene_synonym MFAP1 4236

Chemical mentions

Word Match MeSH Name ChEBI
mRNA mRNA mRNA chebi:33699
Citrate citrate chebi:133748
Malate Malate (2S)-2-hydroxybutanedioic acid chebi:30797
Acetyl-CoA acetyl-CoA 3'-phosphonatoadenosine 5'-(3-{(3R)-4-[(3-{[2-(acetylsulfanyl)ethyl]amino}-3-oxopropyl)amino]-3-hydroxy-2,2-dimethyl-4-oxobutyl} diphosphate) chebi:57288
PEP PEP 2-(phosphonooxy)prop-2-enoic acid chebi:44897
Fumarate fumarate fumarate chebi:29806
Oxalosuccinate Oxalosuccinate 1-oxopropane-1,2,3-tricarboxylic acid chebi:7815
Succinate succinate succinate chebi:30031
2-Oxoglutarate 2-oxoglutarate 2-oxoglutarate chebi:16810
Succinyl-CoA succinyl-CoA 3'-phosphonatoadenosine 5'-{3-[(3R)-4-{[3-({2-[(3-carboxylatopropanoyl)sulfanyl]ethyl}amino)-3-oxopropyl]amino}-3-hydroxy-2,2-dimethyl-4-oxobutyl]diphosphate} chebi:57292
Protein Protein a protein chebi:16541
Citrate citrate chebi:133748
PEP PEP 2-(phosphonooxy)prop-2-enoic acid chebi:44897
Fumarate fumarate fumarate chebi:29806
Oxalosuccinate Oxalosuccinate 1-oxopropane-1,2,3-tricarboxylic acid chebi:7815
2-Oxoglutarate 2-oxoglutarate 2-oxoglutarate chebi:16810
Succinate succinate succinate chebi:30031
Succinyl-CoA succinyl-CoA 3'-phosphonatoadenosine 5'-{3-[(3R)-4-{[3-({2-[(3-carboxylatopropanoyl)sulfanyl]ethyl}amino)-3-oxopropyl]amino}-3-hydroxy-2,2-dimethyl-4-oxobutyl]diphosphate} chebi:57292
Metabolite metabolite metabolite chebi:25212

Disease mentions

Word Match MeSH Name DOID