Gut microbiota–host interplays in tryptophan and tyrosine metabolism, which affect mood and emotional states

Gut microbiota–host interplays in tryptophan and tyrosine metabolism, which affect mood and emotional states. Based on the monoamine hypothesis of depression, disruptions in brain serotonin, dopamine, or norepinephrine pathways may induce depression. The serotonin signaling pathway starts from the raphe nucleus and spreads to the entire brain, positively influencing the nucleus accumbence responsible for reward and pleasure. The enzymes TPH1 and TPH2 are involved in serotonin synthesis, and TH is involved in dopamine synthesis. Serotonin and dopamine can further proceed to produce melatonin and noradrenaline, respectively. In brain tissue, these neurotransmitters interact with glutamate (excitatory) and GABA (inhibitory) neurotransmitters, which are also implicated in the pathogenesis of depression. The gut microbiota and its metabolites play a key role in providing substrates and influencing enzymes involved in dopamine and serotonin synthesis, consequently affecting noradrenaline (particularly in locus coeruleus, LC) and melatonin (in the pineal gland) production. Melatonin regulates circadian rhythms, which are often disrupted in depression. Additionally, gut microbiota and its metabolites, especially butyrate, help mitigate blood and brain inflammation and influence the activity of the vagus nerve, which directly communicates with the brain in the medulla oblongata. The red T-shape marks indicate inhibition
Gut microbiota–host interplays in tryptophan and tyrosine metabolism, which affect mood and emotional states

Publication

Microbiota-Induced Epigenetic Alterations in Depressive Disorders Are Targets for Nutritional and Probiotic Therapies (2023) Shabnam Nohesara, et al. Genes (Basel). 2023 Dec;14(12). Figure: F1.

Gene mentions


Organism Group Word Match Source NCBI Symbol NCBI ID
Homo sapiens Primates TH TH ncbigene_symbol TH 7054
Homo sapiens Primates DBH DBH ncbigene_symbol DBH 1621
Homo sapiens Primates HDAC HDAC ncbigene_synonym HDAC9 9734
Homo sapiens Primates HDAC HDAC famplex_relations HDAC1 3065
Homo sapiens Primates HDAC HDAC famplex_relations HDAC2 3066
Homo sapiens Primates HDAC HDAC famplex_relations HDAC3 8841
Homo sapiens Primates HDAC HDAC famplex_relations HDAC8 55869
Homo sapiens Primates HDAC HDAC famplex_relations HDAC4 9759
Homo sapiens Primates HDAC HDAC famplex_relations HDAC5 10014
Homo sapiens Primates HDAC HDAC famplex_relations HDAC7 51564
Homo sapiens Primates HDAC HDAC famplex_relations HDAC6 10013
Homo sapiens Primates HDAC HDAC famplex_relations HDAC10 83933
Homo sapiens Primates HDAC HDAC famplex_relations SIRT1 23411
Homo sapiens Primates HDAC HDAC famplex_relations SIRT2 22933
Homo sapiens Primates HDAC HDAC famplex_relations SIRT3 23410
Homo sapiens Primates HDAC HDAC famplex_relations SIRT4 23409
Homo sapiens Primates HDAC HDAC famplex_relations SIRT5 23408
Homo sapiens Primates HDAC HDAC famplex_relations SIRT6 51548
Homo sapiens Primates HDAC HDAC famplex_relations SIRT7 51547
Homo sapiens Primates HDAC HDAC famplex_relations HDAC11 79885
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H1-0 3005
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H1-1 3024
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H1-2 3006
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H1-3 3007
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H1-4 3008
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H1-5 3009
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H1-6 3010
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H1-7 341567
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H1-8 132243
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H1-10 8971
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations NA NaN
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H2AB1 474382
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H2AJ 55766
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H2AZ2 94239
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H2AX 3014
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations MACROH2A1 9555
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations MACROH2A2 55506
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H2AZ1 3015
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H2AC1 221613
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H2AC6 8334
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H2AC7 3013
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H2AC12 85235
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H2AC14 8331
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H2AC21 317772
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H2AC20 8338
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H2AC25 92815
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H2BC1 255626
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H2BC3 3018
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H2BC5 3017
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H2BC9 8345
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H2BC11 8970
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H2BC12 85236
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H2BC13 8340
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H2BC14 8342
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H2BC15 8341
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H2BC17 8348
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H2BC18 440689
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H2BC19P 337874
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H2BC20P 337873
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H2BC21 8349
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H2BC26 128312
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H2BC12L 54145
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H2BW2 286436
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H2BW1 158983
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H3-4 8290
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H3-5 440093
Homo sapiens Primates HDACinhibition&Histone HISTONE famplex_relations H4C7 8369
Homo sapiens Primates ASMT ASMT ncbigene_symbol ASMT 438

Chemical mentions

Word Match MeSH Name ChEBI
Dopamine dopamine dopamine chebi:59905
GABA GABA 4-aminobutanoic acid chebi:16865
Glutamate Glutamate (2S)-2-aminopentanedioic acid chebi:16015
Butyrate butyrate butanoate chebi:17968
Tyrosine Tyrosine tyrosine chebi:18186
Serotonin serotonin serotonin chebi:350546
Tryptophan tryptophan (2S)-2-azaniumyl-3-(1H-indol-3-yl)propanoate chebi:57912

Disease mentions

Word Match MeSH Name DOID